myRT

myRT report for GCA_003975805.1_ASM397580v1

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Seq: RXBL01000005.1 (414191 bp)
Overview 1 RT 1: 49933-58791 bp 2 RT 2: 75055-85352 bp Neighborhood of RT #1 [49933, 58799] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [75055, 85363] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 49933-50607 bp Feature: domain Description: NTP_transferase_like_1 Location: 49939-50578 bp Feature: domain Description: NTP_transferase_like_1 Location: 49939-50578 bp Feature: gene Location: 50604-51620 bp Feature: domain Description: COG3178 Location: 50607-51606 bp Feature: domain Description: COG31 78 Location: 50607-51 606 bp Feature: gene Location: 52892-54604 bp Feature: domain Description: RVT_N Location: 52949-53192 bp Feature: domain Description: RVT_N Location: 52949-531 92 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53237-53873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53237-53873 bp Feature: domain Description: YkfC Location: 54083-54233 bp Feature: domain Description: YkfC Location: 54083-54233 bp Feature: domain Description: HNH Note: nucleases Location: 54410-54548 bp Feature: domain Description: HNH Note: nucleases Location: 5441 0-54548 bp Feature: gene Location: 54737-57526 bp Feature: domain Description: LptD Location: 54932-57512 bp Feature: domain Description: LptD Location: 54932-5751 2 bp Feature: gene Location: 57585-58799 bp Feature: domain Description: PRK10770 Location: 57597-58791 bp Feature: domain Description: PRK1 0770 Location: 57597-58791 bp Feature: gene Location: 75055-76908 bp Feature: domain Description: PRK05658 Location: 75067-76906 bp Feature: domain Description: PRK05658 Location: 75067-76906 bp Feature: gene Location: 77015-80752 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 77123-77780 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 771 23-77780 bp Feature: domain Description: PRK09776 Location: 77993-78464 bp Feature: domain Description: PRK09776 Location: 77993-78464 bp Feature: domain Description: PAS Location: 78554-79046 bp Feature: domain Description: PAS Location: 78554-79046 bp Feature: domain Description: PRK10060 Location: 79055-80702 bp Feature: domain Description: PRK1 0060 Location: 79055-80702 bp Feature: gene Location: 81833-83518 bp Feature: domain Description: RVT_N Location: 81890-82130 bp Feature: domain Description: RVT_N Location: 81 890-821 30 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82178-82814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 821 78-8281 4 bp Feature: domain Description: GIIM Note: maturase Location: 82868-83099 bp Feature: domain Description: GIIM Note: maturase Location: 82868-83099 bp Feature: domain Description: HNH Note: nucleases Location: 83351-83489 bp Feature: domain Description: HNH Note: nucleases Location: 83351 -83489 bp Feature: gene Location: 83846-83983 bp Feature: gene Location: 84242-85363 bp Feature: domain Description: COG3177 Location: 84260-85352 bp Feature: domain Description: COG31 77 Location: 84260-85352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: RXBL01000019.1 (90325 bp)
Overview 1 RT 1: 47876-50028 bp Neighborhood of RT #1 [47876, 50561] HipB RVT-UG17 Feature: gene Location: 47876-48157 bp Feature: domain Description: HipB Location: 47897-48131 bp Feature: domain Description: HipB Location: 47897-48131 bp Feature: gene Location: 48243-48668 bp Feature: gene Location: 49197-50561 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 49425-50028 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4942 5-5002 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-UG17

Seq: RXBL01000003.1 (649930 bp)
Overview 1 RT 1: 644102-649631 bp Neighborhood of RT #1 [644102, 649927] CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 644102-645646 bp Feature: domain Description: CHD Location: 644318-644732 bp Feature: domain Description: CHD Location: 6443 18-64473 2 bp Feature: domain Description: CHD Location: 644960-645449 bp Feature: domain Description: CHD Location: 644960-645449 bp Feature: gene Location: 646730-646909 bp Feature: gene Location: 647641-648909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 647854-648511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 647854-648511 bp Feature: domain Description: GIIM Note: maturase Location: 648589-648811 bp Feature: domain Description: GIIM Note: maturase Location: 648589-648811 bp Feature: gene Location: 649298-649927 bp Feature: domain Description: DUF772 Location: 649436-649631 bp Feature: domain Description: DUF772 Location: 64943 6-64963 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: RXBL01000014.1 (221111 bp)
Overview 1 RT 1: 78772-85975 bp Neighborhood of RT #1 [78772, 85995] Porin_O_P RVT-GII GIIM Hydantoinase_B HyuA Feature: gene Location: 78772-79950 bp Feature: domain Description: Porin_O_P Location: 78997-79834 bp Feature: domain Description: Porin_O_P Location: 78997-79834 bp Feature: gene Location: 80131-80610 bp Feature: gene Location: 80615-81823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80807-81422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80807-814 22 bp Feature: domain Description: GIIM Note: maturase Location: 81476-81704 bp Feature: domain Description: GIIM Note: maturase Location: 814 76-81704 bp Feature: gene Location: 82124-83869 bp Feature: domain Description: Hydantoinase_B Location: 82139-83723 bp Feature: domain Description: Hydantoinase_B Location: 82139-83723 bp Feature: gene Location: 83905-85995 bp Feature: domain Description: HyuA Location: 83920-85975 bp Feature: domain Description: HyuA Location: 83920-85975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Porin_O_P (pfam07396), RVT-GII, GIIM (pfam08388), Hydantoinase_B (pfam02538), HyuA (COG0145)