myRT

myRT report for GCA_003978825.1_ASM397882v1

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Seq: QNYG01000315.1 (2919 bp)
Overview 1 RT 1: 194-2546 bp Neighborhood of RT #1 [194, 2546] RVT-UG26 RT_RNaseH_2 Integrase_H2C2 rve Feature: gene Location: 194-406 bp Feature: gene Location: 467-1372 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 659-794 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 659-794 bp Feature: domain Description: RT_RNaseH_2 Location: 998-1277 bp Feature: domain Description: RT_RNaseH_2 Location: 998-1 277 bp Feature: gene Location: 1513-2271 bp Feature: domain Description: Integrase_H2C2 Location: 1708-1864 bp Feature: domain Description: Integrase_H2C2 Location: 1 708-1 864 bp Feature: domain Description: rve Location: 1930-2236 bp Feature: domain Description: rve Location: 1 930-2236 bp Feature: gene Location: 2244-2546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26, RT_RNaseH_2 (pfam17919), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: QNYG01000078.1 (3781 bp)
Overview 1 RT 1: 2-3780 bp Neighborhood of RT #1 [2, 3780] Cas8c_I-C RVT-GII GIIM PHP_HisPPase_Hisj_like Feature: gene Location: 2-523 bp Feature: domain Description: Cas8c_I-C Location: 35-470 bp Feature: domain Description: Cas8c_I-C Location: 35-470 bp Feature: gene Location: 1078-1209 bp Feature: gene Location: 1316-2659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1577-2198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1577-2 198 bp Feature: domain Description: GIIM Note: maturase Location: 2240-2453 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 40-2 453 bp Feature: gene Location: 2807-3511 bp Feature: domain Description: PHP_HisPPase_Hisj_like Location: 2810-3500 bp Feature: domain Description: PHP_HisPPase_Hisj_like Location: 2 810-3500 bp Feature: gene Location: 3583-3780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas8c_I-C (cl12004), RVT-GII, GIIM (pfam08388), PHP_HisPPase_Hisj_like (cd12110)

Seq: QNYG01000136.1 (3726 bp)
Overview 1 RT 1: 2-2337 bp Neighborhood of RT #1 [2, 2546] RVT-GII Zn_Tnp_IS91 Y2_Tnp Feature: gene Location: 2-616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 218-617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 218-617 bp Feature: gene Location: 763-993 bp Feature: gene Location: 1425-2546 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1449-1719 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1449-1719 bp Feature: domain Description: Y2_Tnp Location: 1845-2337 bp Feature: domain Description: Y2_Tnp Location: 1845-23 3 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986)

Seq: QNYG01000121.1 (3349 bp)
Overview 1 RT 1: 131-2877 bp Neighborhood of RT #1 [131, 3209] RNase_HI_RT_Ty3 Integrase_H2C2 rve RVT-UNC Feature: gene Location: 131-367 bp Feature: gene Location: 770-2503 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 773-1004 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 773-1004 bp Feature: domain Description: Integrase_H2C2 Location: 1268-1430 bp Feature: domain Description: Integrase_H2C2 Location: 1268-14 30 bp Feature: domain Description: rve Location: 1481-1793 bp Feature: domain Description: rve Location: 14 81-1793 bp Feature: gene Location: 2601-3209 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2631-2877 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2631-2877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), RVT-UG17/RVT-DGRs/RVT-UG20/RVT-GII(RVT-UNC)

Seq: QNYG01000052.1 (3394 bp)
Overview 1 RT 1: 117-3392 bp Neighborhood of RT #1 [117, 3392] RVT-UNC RT_RNaseH_2 RT_RNaseH_2 Feature: gene Location: 117-1175 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 405-540 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 405 -5 40 bp Feature: domain Description: RT_RNaseH_2 Location: 771-927 bp Feature: domain Description: RT_RNaseH_2 Location: 771-927 bp Feature: domain Description: RT_RNaseH_2 Location: 969-1107 bp Feature: domain Description: RT_RNaseH_2 Location: 969-1107 bp Feature: gene Location: 2272-2505 bp Feature: gene Location: 2910-3392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-UG20/RVT-DGRs/RVT-UG26(RVT-UNC), RT_RNaseH_2 (pfam17919)

Seq: QNYG01000316.1 (2798 bp)
Overview 1 RT 1: 2-1710 bp Neighborhood of RT #1 [2, 2504] Exo_endo_phos_2 RVT-CRISPR-like Feature: gene Location: 2-562 bp Feature: domain Description: Exo_endo_phos_2 Location: 11-224 bp Feature: domain Description: Exo_endo_phos_2 Location: 11-224 bp Feature: gene Location: 588-2504 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1089-1710 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1089-1710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Exo_endo_phos_2 (pfam14529), RVT-CRISPR

Seq: QNYG01000208.1 (2899 bp)
Overview 1 RT 1: 1-568 bp Neighborhood of RT #1 [1, 1911] RVT-UNC Feature: gene Location: 1-1911 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 127-568 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 127 -568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27/RVT-UG19/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: QNYG01000013.1 (3438 bp)
Overview 1 RT 1: 3-3437 bp Neighborhood of RT #1 [3, 3436] retropepsin_like RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 3-959 bp Feature: gene Location: 968-3436 bp Feature: domain Description: retropepsin_like Location: 1016-1277 bp Feature: domain Description: retropepsin_like Location: 1016-1277 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1934-2099 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1934-2099 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2387-2741 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 238 7-2741 bp Feature: domain Description: Integrase_H2C2 Location: 2993-3158 bp Feature: domain Description: Integrase_H2C2 Location: 2993-3158 bp Feature: domain Description: rve Location: 3203-3437 bp Feature: domain Description: rve Location: 3203-3437 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RVT-DGRs/RVT-UG7/RVT-UG16/RVT-UG11(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: QNYG01000143.1 (5778 bp)
Overview 1 RT 1: 1943-5601 bp Neighborhood of RT #1 [1943, 5601] INT_Cre_C RVT-UNC RNase_HI_RT_DIRS1 Feature: gene Location: 1943-2086 bp Feature: gene Location: 2451-3218 bp Feature: domain Description: INT_Cre_C Location: 2712-3201 bp Feature: domain Description: INT_Cre_C Location: 2712-3201 bp Feature: gene Location: 3338-4939 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3878-4142 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3878-4142 bp Feature: domain Description: RNase_HI_RT_DIRS1 Location: 4487-4832 bp Feature: domain Description: RNase_HI_RT_DIRS1 Location: 4487-4832 bp Feature: gene Location: 5086-5295 bp Feature: gene Location: 5431-5601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Cre_C (cd00799), RVT-UG11/RVT-UG4/RVT-UG19/RVT-UG12(RVT-UNC), RNase_HI_RT_DIRS1 (cd09275)

Seq: QNYG01000394.1 (4333 bp)
Overview 1 RT 1: 2-4184 bp Neighborhood of RT #1 [2, 4189] RVT-CRISPR Cas1_I-II-III RVT-GII GIIM Feature: gene Location: 2-157 bp Feature: gene Location: 279-1121 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 495-1095 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 495-10 95 bp Feature: gene Location: 1096-1503 bp Feature: domain Description: Cas1_I-II-III Location: 1099-1363 bp Feature: domain Description: Cas1_I-II-III Location: 10 99-1363 bp Feature: gene Location: 1587-1820 bp Feature: gene Location: 2613-3152 bp Feature: gene Location: 3202-3645 bp Feature: gene Location: 3674-4189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3680-3980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3680-3980 bp Feature: domain Description: GIIM Note: maturase Location: 4055-4184 bp Feature: domain Description: GIIM Note: maturase Location: 4055-4184 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), RVT-GII, GIIM (pfam08388)