myRT

myRT report for GCA_003980805.1_ASM398080v1

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Seq: PNSU01000017.1 (98831 bp)
Overview 1 RT 1: 10-8162 bp Neighborhood of RT #1 [10, 8173] RVT-UG8 INT_Rci_Hp1_C INT_P4_C mutS1 Feature: gene Location: 10-285 bp Feature: gene Location: 712-2730 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1282-1732 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 282-1 732 bp Feature: gene Location: 3986-5446 bp Feature: domain Description: INT_Rci_Hp1_C Location: 4361-4568 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 4361 -4568 bp Feature: domain Description: INT_P4_C Location: 4787-5324 bp Feature: domain Description: INT_P4_C Location: 4787-5324 bp Feature: gene Location: 5591-8173 bp Feature: domain Description: mutS1 Location: 5642-8162 bp Feature: domain Description: mutS1 Location: 5642-81 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), mutS1 (TIGR01070)

Seq: PNSU01000120.1 (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PNSU01000030.1 (48849 bp)
Overview 1 RT 1: 41201-47043 bp Neighborhood of RT #1 [41201, 47045] Pox_D5 RVT-Retrons TIR_2 Prim_Zn_Ribbon COG3378 DUF5375 Feature: gene Location: 41201-41383 bp Feature: gene Location: 41769-41921 bp Feature: domain Description: Pox_D5 Location: 41772-41895 bp Feature: domain Description: Pox_D5 Location: 41772-41895 bp Feature: gene Location: 42159-43790 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42474-43071 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42474-43 071 bp Feature: domain Description: TIR_2 Location: 43395-43752 bp Feature: domain Description: TIR_2 Location: 43 3 95-43 752 bp Feature: gene Location: 44377-46710 bp Feature: domain Description: Prim_Zn_Ribbon Location: 44467-44575 bp Feature: domain Description: Prim_Zn_Ribbon Location: 44467-44575 bp Feature: domain Description: COG3378 Location: 45184-46699 bp Feature: domain Description: COG3 3 78 Location: 45184-46699 bp Feature: gene Location: 46725-47045 bp Feature: domain Description: DUF5375 Location: 46728-47043 bp Feature: domain Description: DUF53 75 Location: 46728-47043 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pox_D5 (pfam03288), RVT-Retrons, TIR_2 (pfam13676), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), DUF5375 (pfam17345)