myRT

myRT report for GCA_003980905.1_ASM398090v1

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Seq: PNSX01000016.1 (98843 bp)
Overview 1 RT 1: 10-8162 bp Neighborhood of RT #1 [10, 8173] RVT-UG8 INT_Rci_Hp1_C INT_P4_C mutS1 Feature: gene Location: 10-285 bp Feature: gene Location: 712-2730 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1282-1732 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 282-1 732 bp Feature: gene Location: 3986-5446 bp Feature: domain Description: INT_Rci_Hp1_C Location: 4361-4568 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 4361 -4568 bp Feature: domain Description: INT_P4_C Location: 4787-5324 bp Feature: domain Description: INT_P4_C Location: 4787-5324 bp Feature: gene Location: 5591-8173 bp Feature: domain Description: mutS1 Location: 5642-8162 bp Feature: domain Description: mutS1 Location: 5642-81 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), mutS1 (TIGR01070)

Seq: PNSX01000100.1 (4037 bp)
Overview 1 RT 1: 288-3454 bp Neighborhood of RT #1 [288, 3459] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 288-497 bp Feature: gene Location: 632-2533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 899-1730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 899-1730 bp Feature: domain Description: Intron_maturas2 Location: 1844-2102 bp Feature: domain Description: Intron_maturas2 Location: 1844-2 102 bp Feature: domain Description: HNHc Note: nucleases Location: 2276-2438 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 76-2 438 bp Feature: gene Location: 2728-3168 bp Feature: domain Description: PRK13732 Location: 2734-3166 bp Feature: domain Description: PRK13732 Location: 2 734-3166 bp Feature: gene Location: 3226-3459 bp Feature: domain Description: DUF905 Location: 3256-3454 bp Feature: domain Description: DUF905 Location: 32 56-3454 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: PNSX01000122.1 (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 66-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173 -13 71 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PNSX01000063.1 (19651 bp)
Overview 1 RT 1: 16574-19126 bp Neighborhood of RT #1 [16574, 19164] Pox_D5 RVT-Retrons TIR_2 Feature: gene Location: 16574-16756 bp Feature: gene Location: 17143-17295 bp Feature: domain Description: Pox_D5 Location: 17146-17269 bp Feature: domain Description: Pox_D5 Location: 1714 6-17269 bp Feature: gene Location: 17533-19164 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17848-18445 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1784 8-184 4 5 bp Feature: domain Description: TIR_2 Location: 18769-19126 bp Feature: domain Description: TIR_2 Location: 18769-19126 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pox_D5 (pfam03288), RVT-Retrons, TIR_2 (pfam13676)