myRT

myRT report for GCA_003989595.1_ASM398959v1

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Seq: PYHU01000005.1 (537197 bp)
Overview 1 RT 1: 533401-537146 bp Neighborhood of RT #1 [533401, 537196] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM HNHc Feature: gene Location: 533401-533625 bp Feature: gene Location: 534232-535728 bp Feature: domain Description: LZ_Tnp_IS66 Location: 534313-534505 bp Feature: domain Description: LZ_Tnp_IS66 Location: 53431 3-534505 bp Feature: domain Description: zf-IS66 Location: 534532-534661 bp Feature: domain Description: zf-IS66 Location: 534532-534661 bp Feature: domain Description: DDE_Tnp_IS66 Location: 534721-535582 bp Feature: domain Description: DDE_Tnp_IS66 Location: 534721 -535582 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 535603-535711 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 535603-53571 1 bp Feature: gene Location: 536033-537196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 536054-536513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 536054-53651 3 bp Feature: domain Description: GIIM Note: maturase Location: 536573-536798 bp Feature: domain Description: GIIM Note: maturase Location: 536573-536798 bp Feature: domain Description: HNHc Note: nucleases Location: 536999-537146 bp Feature: domain Description: HNHc Note: nucleases Location: 536999-5371 46 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: PYHU01000010.1 (211788 bp)
Overview 1 RT 1: 185358-194487 bp Neighborhood of RT #1 [185358, 194507] COG0610 AAA_13 RVT-UG17 SLATT_5 RMtype1_S_MjaORF132P_Sau1132ORF3780P-TRD1-CR1_like RMtype1_S_MjaORF132P_Sau1132ORF3780P-TRD1-CR1_like Feature: gene Location: 185358-188678 bp Feature: domain Description: COG0610 Location: 185379-188328 bp Feature: domain Description: COG0610 Location: 185379-18832 8 bp Feature: gene Location: 188678-191047 bp Feature: domain Description: AAA_13 Location: 188711-190565 bp Feature: domain Description: AAA_13 Location: 188711-190565 bp Feature: gene Location: 191065-192396 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 191293-191896 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1912 93-191896 bp Feature: gene Location: 192393-193019 bp Feature: domain Description: SLATT_5 Location: 192405-192999 bp Feature: domain Description: SLATT_5 Location: 192 405-192 999 bp Feature: gene Location: 193221-194507 bp Feature: domain Description: RMtype1_S_MjaORF132P_Sau1132ORF3780P-TRD1-CR1_like Location: 193245-193782 bp Feature: domain Description: RMtype1_S_MjaORF132 P_Sau1132 ORF3780P-TRD1-CR1_like Location: 1932 45-193782 bp Feature: domain Description: RMtype1_S_MjaORF132P_Sau1132ORF3780P-TRD1-CR1_like Location: 194208-194487 bp Feature: domain Description: RMtype1_S_MjaORF132 P_Sau1132 ORF3780P-TRD1-CR1_like Location: 1942 08-194487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), AAA_13 (pfam13166), RVT-UG17, SLATT_5 (pfam18160), RMtype1_S_MjaORF132P_Sau1132ORF3780P-TRD1-CR1_like (cd17515)

Seq: PYHU01000039.1 (22322 bp)
Overview 1 RT 1: 79-1366 bp Neighborhood of RT #1 [79, 1366] RVT_N RVT-GII Feature: gene Location: 79-654 bp Feature: domain Description: RVT_N Location: 136-379 bp Feature: domain Description: RVT_N Location: 13 6-3 79 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 424-613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 424-613 bp Feature: gene Location: 714-878 bp Feature: gene Location: 1076-1366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII