myRT

myRT report for GCA_003990585.1_ASM399058v1

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Seq: RSCN01000015.1 (158763 bp)
Overview 1 RT 1: 121361-124487 bp Neighborhood of RT #1 [121361, 124487] YfmG Avd_like RVT-DGRs Feature: gene Location: 121361-122200 bp Feature: domain Description: YfmG Location: 121418-122180 bp Feature: domain Description: YfmG Location: 1 21 41 8-1 221 80 bp Feature: gene Location: 122410-122754 bp Feature: domain Description: Avd_like Location: 122428-122734 bp Feature: domain Description: Avd_like Location: 1 22428-1 22734 bp Feature: gene Location: 122772-123830 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 122979-123624 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 22979-1 23624 bp Feature: gene Location: 124053-124196 bp Feature: gene Location: 124284-124487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Avd_like (cd16376), RVT-DGRs

Seq: RSCN01000028.1 (93594 bp)
Overview 1 RT 1: 27295-32015 bp Neighborhood of RT #1 [27295, 32164] BcsQ RVT_N RVT-GII GIIM McrA DDE_Tnp_1_3 Feature: gene Location: 27295-28038 bp Feature: domain Description: BcsQ Location: 27298-28030 bp Feature: domain Description: BcsQ Location: 2 72 98-2 8030 bp Feature: gene Location: 28244-28489 bp Feature: gene Location: 28554-30356 bp Feature: domain Description: RVT_N Location: 28626-28869 bp Feature: domain Description: RVT_N Location: 2 862 6-2 8869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28914-29607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8914-2 9607 bp Feature: domain Description: GIIM Note: maturase Location: 29709-29940 bp Feature: domain Description: GIIM Note: maturase Location: 2 9709-2 9940 bp Feature: domain Description: McrA Location: 29985-30330 bp Feature: domain Description: McrA Location: 2 9985-30330 bp Feature: gene Location: 30515-30670 bp Feature: gene Location: 31466-32164 bp Feature: domain Description: DDE_Tnp_1_3 Location: 31598-32015 bp Feature: domain Description: DDE_Tnp_1_3 Location: 31598-32 015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BcsQ (COG1192), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), DDE_Tnp_1_3 (pfam13612)

Seq: RSCN01000058.1 (24523 bp)
Overview 1 RT 1: 21285-24244 bp Neighborhood of RT #1 [21285, 24244] DUF928 McrA RVT-GII GIIM Feature: gene Location: 21285-22049 bp Feature: domain Description: DUF928 Location: 21438-22038 bp Feature: domain Description: DUF928 Location: 2143 8-2203 8 bp Feature: gene Location: 22324-22587 bp Feature: domain Description: McrA Location: 22330-22561 bp Feature: domain Description: McrA Location: 223 3 0-22561 bp Feature: gene Location: 22694-23260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22766-23045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22766-23 045 bp Feature: domain Description: GIIM Note: maturase Location: 23102-23222 bp Feature: domain Description: GIIM Note: maturase Location: 23 102-23 222 bp Feature: gene Location: 23993-24244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF928 (pfam06051), McrA (COG4058), RVT-GII, GIIM (pfam08388)

Seq: RSCN01000065.1 (17530 bp)
Overview 1 RT 1: 1653-8956 bp Neighborhood of RT #1 [1653, 8956] ANK Ank_4 ANK ANK RVT-GII McrA RVT_N RVT-GII GIIM McrA RVT_N RVT-GII Feature: gene Location: 1653-3017 bp Feature: domain Description: ANK Location: 1956-2205 bp Feature: domain Description: ANK Location: 1956-2205 bp Feature: domain Description: Ank_4 Location: 2214-2340 bp Feature: domain Description: Ank_4 Location: 2214 -234 0 bp Feature: domain Description: ANK Location: 2436-2601 bp Feature: domain Description: ANK Location: 24 36-2601 bp Feature: domain Description: ANK Location: 2610-2865 bp Feature: domain Description: ANK Location: 2610-2865 bp Feature: gene Location: 3268-3417 bp Feature: gene Location: 3644-4972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3773-4370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3773-4 370 bp Feature: domain Description: McrA Location: 4604-4937 bp Feature: domain Description: McrA Location: 4 604 -4 937 bp Feature: gene Location: 4930-6618 bp Feature: domain Description: RVT_N Location: 5080-5317 bp Feature: domain Description: RVT_N Location: 5080-5317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5377-6031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5377-6031 bp Feature: domain Description: GIIM Note: maturase Location: 6088-6235 bp Feature: domain Description: GIIM Note: maturase Location: 6088-6235 bp Feature: domain Description: McrA Location: 6268-6586 bp Feature: domain Description: McrA Location: 6268-6586 bp Feature: gene Location: 7035-7439 bp Feature: domain Description: RVT_N Location: 7071-7305 bp Feature: domain Description: RVT_N Location: 7071-7305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7362-7422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7362-74 22 bp Feature: gene Location: 7570-7752 bp Feature: gene Location: 8027-8956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ANK (smart00248), Ank_4 (pfam13637), RVT-GII, McrA (COG4058), RVT_N (pfam13655), GIIM (pfam08388)

Seq: RSCN01000022.1 (116132 bp)
Overview 1 RT 1: 101028-107402 bp Neighborhood of RT #1 [101028, 107402] RVT-CRISPR cas1 HTH_XRE DUF4384 Feature: gene Location: 101028-101849 bp Feature: gene Location: 102680-102826 bp Feature: gene Location: 103682-105688 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 103868-104477 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 103868-104477 bp Feature: domain Description: cas1 Location: 104693-105662 bp Feature: domain Description: cas1 Location: 104693-105 662 bp Feature: gene Location: 106186-106929 bp Feature: domain Description: HTH_XRE Location: 106234-106381 bp Feature: domain Description: HTH_XRE Location: 106234-106381 bp Feature: domain Description: DUF4384 Location: 106555-106786 bp Feature: domain Description: DUF4384 Location: 1065 5 5 -106786 bp Feature: gene Location: 107253-107402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, cas1 (TIGR00287), HTH_XRE (smart00530), DUF4384 (pfam14326)

Seq: RSCN01000014.1 (170587 bp)
Overview 1 RT 1: 36610-42546 bp Neighborhood of RT #1 [36610, 42566] hisS DUF3598 RVT-DGRs COG4249 YfmG Feature: gene Location: 36610-37998 bp Feature: domain Description: hisS Location: 36631-37993 bp Feature: domain Description: hisS Location: 36 6 31-37993 bp Feature: gene Location: 38123-38566 bp Feature: domain Description: DUF3598 Location: 38153-38558 bp Feature: domain Description: DUF3598 Location: 38153-38558 bp Feature: gene Location: 38901-39797 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38940-39582 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38940-39582 bp Feature: gene Location: 39933-40121 bp Feature: gene Location: 40614-42566 bp Feature: domain Description: COG4249 Location: 40617-41322 bp Feature: domain Description: COG4249 Location: 406 17-41322 bp Feature: domain Description: YfmG Location: 41547-42546 bp Feature: domain Description: YfmG Location: 41547-42546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT hisS (TIGR00442), DUF3598 (pfam12204), RVT-DGRs, COG4249 (Uncharacterized protein, contains caspase domain ), YfmG (COG1262)

Seq: RSCN01000003.1 (281593 bp)
Overview 1 RT 1: 229060-231684 bp Neighborhood of RT #1 [229060, 231684] COG4634 RVT-Retrons HTH_XRE Feature: gene Location: 229060-229392 bp Feature: domain Description: COG4634 Location: 229063-229387 bp Feature: domain Description: COG4634 Location: 229063-229387 bp Feature: gene Location: 229473-230219 bp Feature: gene Location: 230256-231116 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 230367-230904 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 230367 -230904 bp Feature: gene Location: 231157-231444 bp Feature: domain Description: HTH_XRE Location: 231178-231310 bp Feature: domain Description: HTH_XRE Location: 23117 8-231310 bp Feature: gene Location: 231523-231684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4634 (Predicted nuclease, contains PIN domain, potential toxin-antitoxin system component ), RVT-Retrons, HTH_XRE (smart00530)

Seq: RSCN01000005.1 (256467 bp)
Overview 1 RT 1: 35858-41493 bp Neighborhood of RT #1 [35858, 41493] RVT_N RVT-GII McrA InsQ Feature: gene Location: 35858-36277 bp Feature: gene Location: 36504-37202 bp Feature: gene Location: 37305-38882 bp Feature: domain Description: RVT_N Location: 37338-37581 bp Feature: domain Description: RVT_N Location: 37338 -3758 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37635-38289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37635-38 28 9 bp Feature: domain Description: McrA Location: 38520-38859 bp Feature: domain Description: McrA Location: 38 520-38 8 59 bp Feature: gene Location: 39522-40853 bp Feature: domain Description: InsQ Location: 39615-40725 bp Feature: domain Description: InsQ Location: 39615-40725 bp Feature: gene Location: 40975-41493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058), InsQ (COG0675)