myRT

myRT report for GCA_003991905.1_ASM399190v1

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Seq: RSCL01000006.1 (465966 bp)
Overview 1 RT 1: 50381-54793 bp 2 RT 2: 414325-421666 bp Neighborhood of RT #1 [50381, 54816] YfmG RVT-DGRs Avd_like YfmG Neighborhood of RT #2 [414325, 421689] COG1479 abortive_AbiA RVT-AbiA acnB fdx_plant Feature: gene Location: 50381-50551 bp Feature: gene Location: 50556-51425 bp Feature: domain Description: YfmG Location: 50622-51402 bp Feature: domain Description: YfmG Location: 50622-51 402 bp Feature: gene Location: 51711-52769 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51921-52563 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51 921 -52563 bp Feature: gene Location: 52782-53117 bp Feature: domain Description: Avd_like Location: 52800-53106 bp Feature: domain Description: Avd_like Location: 52800-531 06 bp Feature: gene Location: 53230-54816 bp Feature: domain Description: YfmG Location: 54043-54793 bp Feature: domain Description: YfmG Location: 54043-54793 bp Feature: gene Location: 414325-416130 bp Feature: domain Description: COG1479 Location: 414373-415747 bp Feature: domain Description: COG1 479 Location: 41 4373-41 5747 bp Feature: gene Location: 416336-416761 bp Feature: domain Description: abortive_AbiA Location: 416369-416756 bp Feature: domain Description: abortive_AbiA Location: 41 6369-41 6756 bp Feature: gene Location: 417083-418255 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 417086-417314 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 41 7086-41 731 4 bp Feature: gene Location: 418500-421142 bp Feature: domain Description: acnB Location: 418503-421083 bp Feature: domain Description: acnB Location: 41 8503-421 083 bp Feature: gene Location: 421372-421689 bp Feature: domain Description: fdx_plant Location: 421384-421666 bp Feature: domain Description: fdx_plant Location: 421 384-421 666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Avd_like (cd16376), COG1479 (Uncharacterized conserved protein, contains ParB-like and HNH nuclease domains ), abortive_AbiA (TIGR04499), RVT-AbiA, acnB (TIGR00117), fdx_plant (TIGR02008)

Seq: RSCL01000008.1 (410192 bp)
Overview 1 RT 1: 246022-250014 bp Neighborhood of RT #1 [246022, 250014] SWIM RVT-Retrons PIN_VapC-like Feature: gene Location: 246022-247680 bp Feature: domain Description: SWIM Location: 247543-247630 bp Feature: domain Description: SWIM Location: 2 47543-2 47630 bp Feature: gene Location: 247761-247958 bp Feature: gene Location: 248144-249571 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 248705-249320 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 48705-2 4932 0 bp Feature: gene Location: 249643-249822 bp Feature: domain Description: PIN_VapC-like Location: 249700-249808 bp Feature: domain Description: PIN_VapC-like Location: 2 49700-2 49808 bp Feature: gene Location: 249835-250014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SWIM (pfam04434), RVT-Retrons, PIN_VapC-like (cd18715)

Seq: RSCL01000015.1 (290899 bp)
Overview 1 RT 1: 220964-224302 bp Neighborhood of RT #1 [220964, 224302] PIN_8 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 220964-221482 bp Feature: domain Description: PIN_8 Location: 220973-221312 bp Feature: domain Description: PIN_8 Location: 220973 -2213 12 bp Feature: gene Location: 221556-221801 bp Feature: gene Location: 221875-223395 bp Feature: domain Description: RVT_N Location: 221878-222007 bp Feature: domain Description: RVT_N Location: 221878-222007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222058-222697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222058-222697 bp Feature: domain Description: GIIM Note: maturase Location: 222772-223003 bp Feature: domain Description: GIIM Note: maturase Location: 222772-223 003 bp Feature: domain Description: HNHc Note: nucleases Location: 223207-223372 bp Feature: domain Description: HNHc Note: nucleases Location: 223 207-223 3 72 bp Feature: gene Location: 223882-224076 bp Feature: gene Location: 224138-224302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_8 (pfam18476), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: RSCL01000002.1 (548479 bp)
Overview 1 RT 1: 148013-156269 bp Neighborhood of RT #1 [148013, 156269] RmlC S2P-M50_like_2 S2P-M50 TPR TPR RVT_N RVT-GII McrA Feature: gene Location: 148013-148459 bp Feature: domain Description: RmlC Location: 148079-148433 bp Feature: domain Description: RmlC Location: 14 8079-14 84 33 bp Feature: gene Location: 148780-151095 bp Feature: domain Description: S2P-M50_like_2 Location: 149698-149932 bp Feature: domain Description: S2P-M50_like_2 Location: 14 9698-14 9932 bp Feature: domain Description: S2P-M50 Location: 149944-150091 bp Feature: domain Description: S2P-M50 Location: 14 994 4 -150091 bp Feature: domain Description: TPR Location: 150529-150751 bp Feature: domain Description: TPR Location: 150529-150751 bp Feature: domain Description: TPR Location: 150778-151057 bp Feature: domain Description: TPR Location: 150778-151057 bp Feature: gene Location: 151499-153013 bp Feature: domain Description: RVT_N Location: 151535-151778 bp Feature: domain Description: RVT_N Location: 151535-151778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151832-152429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151832-1524 29 bp Feature: domain Description: McrA Location: 152663-153002 bp Feature: domain Description: McrA Location: 152663-153002 bp Feature: gene Location: 153002-153241 bp Feature: gene Location: 154446-156269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RmlC (COG4101), S2P-M50_like_2 (cd06160), S2P-M50 (cl10020), TPR (smart00028), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: RSCL01000012.1 (346473 bp)
Overview 1 RT 1: 79184-88469 bp Neighborhood of RT #1 [79184, 88756] TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 CHAT RVT-CRISPR cas1 Cas_Cas1 Feature: gene Location: 79184-80059 bp Feature: gene Location: 80272-83670 bp Feature: domain Description: TPR_10 Location: 80485-80596 bp Feature: domain Description: TPR_10 Location: 80485 -805 96 bp Feature: domain Description: TPR_10 Location: 80605-80725 bp Feature: domain Description: TPR_10 Location: 80605 -80725 bp Feature: domain Description: TPR_10 Location: 80734-80854 bp Feature: domain Description: TPR_10 Location: 80734-8085 4 bp Feature: domain Description: TPR_10 Location: 80863-80980 bp Feature: domain Description: TPR_10 Location: 80863-80980 bp Feature: domain Description: TPR_10 Location: 80983-81106 bp Feature: domain Description: TPR_10 Location: 80983-81106 bp Feature: domain Description: TPR_10 Location: 81142-81232 bp Feature: domain Description: TPR_10 Location: 81142-81232 bp Feature: domain Description: TPR_10 Location: 81238-81355 bp Feature: domain Description: TPR_10 Location: 81238-8135 5 bp Feature: domain Description: TPR_10 Location: 81358-81478 bp Feature: domain Description: TPR_10 Location: 8135 8-81478 bp Feature: domain Description: TPR_10 Location: 81487-81607 bp Feature: domain Description: TPR_10 Location: 81487-81607 bp Feature: domain Description: TPR_10 Location: 81610-81733 bp Feature: domain Description: TPR_10 Location: 81610-81733 bp Feature: domain Description: TPR_10 Location: 81736-81805 bp Feature: domain Description: TPR_10 Location: 81736-81805 bp Feature: domain Description: CHAT Location: 82582-83668 bp Feature: domain Description: CHAT Location: 825 82-83668 bp Feature: gene Location: 83799-85802 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 83985-84591 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 83985 -845 91 bp Feature: domain Description: cas1 Location: 84807-85770 bp Feature: domain Description: cas1 Location: 84807-85 770 bp Feature: gene Location: 86108-86266 bp Feature: gene Location: 87719-88756 bp Feature: domain Description: Cas_Cas1 Location: 87731-88469 bp Feature: domain Description: Cas_Cas1 Location: 87731-88469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR_10 (pfam13374), CHAT (pfam12770), RVT-CRISPR, cas1 (TIGR00287), Cas_Cas1 (pfam01867)

Seq: RSCL01000028.1 (124389 bp)
Overview 1 RT 1: 82-4641 bp Neighborhood of RT #1 [82, 4697] TMEM43 RVT-Retrons Tudor-knot Tudor-knot PG_binding_1 PG_binding_1 Feature: gene Location: 82-255 bp Feature: gene Location: 252-920 bp Feature: domain Description: TMEM43 Location: 351-843 bp Feature: domain Description: TMEM43 Location: 351-843 bp Feature: gene Location: 965-2509 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1655-2276 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16 55-2276 bp Feature: gene Location: 2771-4075 bp Feature: domain Description: Tudor-knot Location: 3761-3887 bp Feature: domain Description: Tudor-knot Location: 376 1-3887 bp Feature: domain Description: Tudor-knot Location: 3944-4070 bp Feature: domain Description: Tudor-knot Location: 3944-4070 bp Feature: gene Location: 4188-4697 bp Feature: domain Description: PG_binding_1 Location: 4245-4422 bp Feature: domain Description: PG_binding_1 Location: 4245-4422 bp Feature: domain Description: PG_binding_1 Location: 4476-4641 bp Feature: domain Description: PG_binding_1 Location: 4476 -46 41 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TMEM43 (pfam07787), RVT-Retrons, Tudor-knot (pfam11717), PG_binding_1 (pfam01471)

Seq: RSCL01000017.1 (266131 bp)
Overview 1 RT 1: 155721-161507 bp Neighborhood of RT #1 [155721, 161557] PinE Zn_ribbon_recom HTH_MerR-SF DUF5372 RVT-GII GIIM McrA NirD Pentapeptide Pentapeptide Feature: gene Location: 155721-157799 bp Feature: domain Description: PinE Location: 155760-156423 bp Feature: domain Description: PinE Location: 1557 60-156423 bp Feature: domain Description: Zn_ribbon_recom Location: 156717-156894 bp Feature: domain Description: Zn_ribbon_recom Location: 1567 17 -156894 bp Feature: domain Description: HTH_MerR-SF Location: 157617-157695 bp Feature: domain Description: HTH_MerR-SF Location: 157 617 -157 695 bp Feature: gene Location: 157805-158251 bp Feature: domain Description: DUF5372 Location: 157829-158039 bp Feature: domain Description: DUF537 2 Location: 157 829-158039 bp Feature: gene Location: 158284-159585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158287-158932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158287 -158932 bp Feature: domain Description: GIIM Note: maturase Location: 158998-159145 bp Feature: domain Description: GIIM Note: maturase Location: 158998-159145 bp Feature: domain Description: McrA Location: 159208-159496 bp Feature: domain Description: McrA Location: 159208-159496 bp Feature: gene Location: 159786-161042 bp Feature: domain Description: NirD Location: 159834-160122 bp Feature: domain Description: NirD Location: 159834-160122 bp Feature: gene Location: 161282-161557 bp Feature: domain Description: Pentapeptide Location: 161354-161393 bp Feature: domain Description: Pentapeptide Location: 161354-161393 bp Feature: domain Description: Pentapeptide Location: 161423-161507 bp Feature: domain Description: Pentapeptide Location: 161423-161507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_MerR-SF (cl02600), DUF5372 (pfam17342), RVT-GII, GIIM (pfam08388), McrA (COG4058), NirD (COG2146), Pentapeptide (pfam00805)