myRT

myRT report for GCA_003991935.1_ASM399193v1

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Seq: RSCM01000013.1 (203519 bp)
Overview 1 RT 1: 87764-96462 bp 2 RT 2: 142089-159579 bp Neighborhood of RT #1 [87764, 96470] COG2251 KOG1805 KOG1805 PRK07452 RVT_N RVT-GII McrA PRK07452 PRK07399 Neighborhood of RT #2 [142089, 159617] couple_hipB RVT_N RVT-GII GIIM INT_FimBE_like HNHc COG5659 RVT_N RVT-GII PinE Zn_ribbon_recom RVT-GII McrA HTH_XRE CitB Feature: gene Location: 87764-91930 bp Feature: domain Description: COG2251 Location: 88505-88658 bp Feature: domain Description: COG2251 Location: 88505-88658 bp Feature: domain Description: KOG1805 Location: 90476-91130 bp Feature: domain Description: KOG1 805 Location: 90476-91 1 30 bp Feature: domain Description: KOG1805 Location: 91457-91796 bp Feature: domain Description: KOG1 805 Location: 91 457-91 796 bp Feature: gene Location: 92179-92805 bp Feature: domain Description: PRK07452 Location: 92182-92785 bp Feature: domain Description: PRK07452 Location: 921 82-92785 bp Feature: gene Location: 93337-94911 bp Feature: domain Description: RVT_N Location: 93373-93619 bp Feature: domain Description: RVT_N Location: 93373-9361 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93670-94327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93670-94327 bp Feature: domain Description: McrA Location: 94564-94882 bp Feature: domain Description: McrA Location: 94564-94882 bp Feature: gene Location: 94926-95357 bp Feature: domain Description: PRK07452 Location: 94992-95352 bp Feature: domain Description: PRK07452 Location: 94992-95352 bp Feature: gene Location: 95475-96470 bp Feature: domain Description: PRK07399 Location: 95586-96462 bp Feature: domain Description: PRK07399 Location: 95586-96462 bp Feature: gene Location: 142089-143702 bp Feature: domain Description: couple_hipB Location: 143535-143649 bp Feature: domain Description: couple_hipB Location: 1 43535-1 43649 bp Feature: gene Location: 144025-145188 bp Feature: gene Location: 146410-147771 bp Feature: domain Description: RVT_N Location: 146461-146701 bp Feature: domain Description: RVT_N Location: 1 46461 -1 46701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146746-147370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 46746-1 47370 bp Feature: domain Description: GIIM Note: maturase Location: 147430-147655 bp Feature: domain Description: GIIM Note: maturase Location: 1 47430-1 47655 bp Feature: gene Location: 147787-148419 bp Feature: domain Description: INT_FimBE_like Location: 147883-148405 bp Feature: domain Description: INT_FimBE_like Location: 1 47883-1 48405 bp Feature: gene Location: 148570-149490 bp Feature: gene Location: 150717-151139 bp Feature: domain Description: HNHc Note: nucleases Location: 150969-151110 bp Feature: domain Description: HNHc Note: nucleases Location: 1 50969-1 51 1 1 0 bp Feature: gene Location: 151596-152924 bp Feature: domain Description: COG5659 Location: 151650-152610 bp Feature: domain Description: COG5659 Location: 1 51 650-1 5261 0 bp Feature: gene Location: 153390-153971 bp Feature: domain Description: RVT_N Location: 153441-153681 bp Feature: domain Description: RVT_N Location: 1 53441 -1 53681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153726-153960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 53726-1 53960 bp Feature: gene Location: 153980-154663 bp Feature: gene Location: 154680-156026 bp Feature: domain Description: PinE Location: 154722-155394 bp Feature: domain Description: PinE Location: 1 54722-1 55394 bp Feature: domain Description: Zn_ribbon_recom Location: 155664-155820 bp Feature: domain Description: Zn_ribbon_recom Location: 1 55664-1 55820 bp Feature: gene Location: 156066-156338 bp Feature: gene Location: 156401-157414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156407-156830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 56407-1 56830 bp Feature: domain Description: McrA Location: 157061-157385 bp Feature: domain Description: McrA Location: 1 57061 -1 57385 bp Feature: gene Location: 157942-158370 bp Feature: domain Description: HTH_XRE Location: 157975-158086 bp Feature: domain Description: HTH_XRE Location: 1 57975-1 58086 bp Feature: gene Location: 158922-159617 bp Feature: domain Description: CitB Location: 158928-159579 bp Feature: domain Description: CitB Location: 1 58928-1 59579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2251 (Predicted nuclease, RecB family ), KOG1805 (KOG1805, DNA replication helicase ), PRK07452 (DNA polymerase III subunit delta; Validated), RVT_N (pfam13655), RVT-GII, McrA (COG4058), PRK07399 (DNA polymerase III subunit delta'; Validated), couple_hipB (TIGR03070), GIIM (pfam08388), INT_FimBE_like (cd01197)
HNHc (smart00507), COG5659 (SRSO17 transposase ), PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_XRE (smart00530), CitB (TIGR02484)

Seq: RSCM01000001.1 (831761 bp)
Overview 1 RT 1: 174530-180566 bp Neighborhood of RT #1 [174530, 180566] COG1900 group_II_RT_mat RVT-UG13 PerM Feature: gene Location: 174530-175564 bp Feature: gene Location: 175585-176754 bp Feature: domain Description: COG1900 Location: 175588-176722 bp Feature: domain Description: COG1900 Location: 175588-17672 2 bp Feature: gene Location: 176925-178745 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 176997-177267 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 176997-1772 67 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 177345-177813 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 177345-177813 bp Feature: gene Location: 179167-180285 bp Feature: domain Description: PerM Location: 179179-180193 bp Feature: domain Description: PerM Location: 179179-180193 bp Feature: gene Location: 180375-180566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1900 (Uncharacterized conserved protein, DUF39 family ), group_II_RT_mat (TIGR04416), RVT-UG13, PerM (COG0628)

Seq: RSCM01000010.1 (234949 bp)
Overview 1 RT 1: 168779-174708 bp Neighborhood of RT #1 [168779, 174708] Cas2_I_II_III Cas1_I-II-III RVT-CRISPR TIGR03985 Feature: gene Location: 168779-169054 bp Feature: domain Description: Cas2_I_II_III Location: 168788-169013 bp Feature: domain Description: Cas2_I_II_III Location: 168788-169013 bp Feature: gene Location: 169234-170415 bp Feature: domain Description: Cas1_I-II-III Location: 169423-170377 bp Feature: domain Description: Cas1_I-II-III Location: 169423 -1703 77 bp Feature: gene Location: 170433-171368 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 170640-171246 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 170640-171246 bp Feature: gene Location: 171570-173042 bp Feature: domain Description: TIGR03985 Location: 172299-173034 bp Feature: domain Description: TIGR03 985 Location: 172299-173 03 4 bp Feature: gene Location: 173188-174708 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), RVT-CRISPR, TIGR03985 (CRISPR-associated protein, TIGR03985 family)

Seq: RSCM01000012.1 (206580 bp)
Overview 1 RT 1: 91893-95146 bp Neighborhood of RT #1 [91893, 95190] YdfG RVT_N RVT-GII McrA SDR_c5 DUF3148 Feature: gene Location: 91893-92246 bp Feature: domain Description: YdfG Location: 91899-92229 bp Feature: domain Description: YdfG Location: 91899-92229 bp Feature: gene Location: 92329-92508 bp Feature: gene Location: 92781-94355 bp Feature: domain Description: RVT_N Location: 92817-93060 bp Feature: domain Description: RVT_N Location: 92817-93060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93114-93771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93114 -93771 bp Feature: domain Description: McrA Location: 94002-94326 bp Feature: domain Description: McrA Location: 94 002-94 326 bp Feature: gene Location: 94492-94875 bp Feature: domain Description: SDR_c5 Location: 94495-94861 bp Feature: domain Description: SDR_c5 Location: 94 4 95-94 861 bp Feature: gene Location: 94885-95190 bp Feature: domain Description: DUF3148 Location: 94963-95146 bp Feature: domain Description: DUF314 8 Location: 94 963-9514 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdfG (COG4221), RVT_N (pfam13655), RVT-GII, McrA (COG4058), SDR_c5 (cd05346), DUF3148 (pfam11347)