myRT

myRT report for GCA_004000725.1_ASM400072v1

Download annotations/find similar RTs

Seq: BILU01000157.1 (14942 bp)
Overview 1 RT 1: 11878-14810 bp Neighborhood of RT #1 [11878, 14941] PRK09124 PRK09124 RVT-GII HNHc Feature: gene Location: 11878-12663 bp Feature: domain Description: PRK09124 Location: 11884-12661 bp Feature: domain Description: PRK091 24 Location: 1 1 884-1 2661 bp Feature: gene Location: 12694-13599 bp Feature: domain Description: PRK09124 Location: 12697-13597 bp Feature: domain Description: PRK091 24 Location: 1 2697-1 3597 bp Feature: gene Location: 13988-14941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13994-14138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3994-1 41 38 bp Feature: domain Description: HNHc Note: nucleases Location: 14693-14810 bp Feature: domain Description: HNHc Note: nucleases Location: 1 4693-1 481 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09124 (ubiquinone-dependent pyruvate dehydrogenase), RVT-GII, HNHc (smart00507)

Seq: BILU01000040.1 (56089 bp)
Overview 1 RT 1: 2-2353 bp Neighborhood of RT #1 [2, 2436] RVT-GII solA HutD Feature: gene Location: 2-526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197-527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197-52 7 bp Feature: gene Location: 654-1787 bp Feature: domain Description: solA Location: 660-1785 bp Feature: domain Description: solA Location: 660-1785 bp Feature: gene Location: 1813-2436 bp Feature: domain Description: HutD Location: 1861-2353 bp Feature: domain Description: HutD Location: 1861-2 353 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, solA (PRK11259), HutD (pfam05962)

Seq: BILU01000239.1 (3059 bp)
Overview 1 RT 1: 1305-2875 bp Neighborhood of RT #1 [1305, 3057] Acetyltransf_1 RVT-GII Feature: gene Location: 1305-1727 bp Feature: domain Description: Acetyltransf_1 Location: 1446-1659 bp Feature: domain Description: Acetyltransf_1 Location: 1446-1659 bp Feature: gene Location: 1890-2258 bp Feature: gene Location: 2398-3057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2425-2875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2425-2875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_1 (pfam00583), RVT-GII

Seq: BILU01000031.1 (68131 bp)
Overview 1 RT 1: 66442-67907 bp Neighborhood of RT #1 [66442, 68128] YdeI YdeI RVT-UNC GIIM GIIM Feature: gene Location: 66442-66723 bp Feature: domain Description: YdeI Location: 66448-66721 bp Feature: domain Description: YdeI Location: 664 4 8-66721 bp Feature: gene Location: 66792-67034 bp Feature: domain Description: YdeI Location: 66795-67011 bp Feature: domain Description: YdeI Location: 66795-67011 bp Feature: gene Location: 67400-68128 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 67406-67544 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 674 06-6754 4 bp Feature: domain Description: GIIM Note: maturase Location: 67619-67733 bp Feature: domain Description: GIIM Note: maturase Location: 67619-67733 bp Feature: domain Description: GIIM Note: maturase Location: 67817-67907 bp Feature: domain Description: GIIM Note: maturase Location: 67817-67907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdeI (COG4430), RVT-GII/RVT-CRISPR/RVT-UG26/RVT-G2L4(RVT-UNC), GIIM (pfam08388)

Seq: BILU01000149.1 (16349 bp)
Overview 1 RT 1: 13975-16155 bp Neighborhood of RT #1 [13975, 16346] ligB RVT-GII GIIM Feature: gene Location: 13975-14880 bp Feature: domain Description: ligB Location: 14008-14860 bp Feature: domain Description: ligB Location: 14008-14860 bp Feature: gene Location: 14902-15048 bp Feature: gene Location: 15318-16346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15321-15897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 321-15 897 bp Feature: domain Description: GIIM Note: maturase Location: 15948-16155 bp Feature: domain Description: GIIM Note: maturase Location: 15 948-1615 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ligB (PRK08097), RVT-GII, GIIM (pfam08388)

Seq: BILU01000294.1 (669 bp)
Overview 1 RT 1: 111-529 bp Neighborhood of RT #1 [111, 666] group_II_RT_mat RVT-GII Feature: gene Location: 111-404 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 117-294 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 117-294 bp Feature: gene Location: 412-666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418-529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418-529 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII

Seq: BILU01000001.1 (217426 bp)
Overview 1 RT 1: 47170-55668 bp 2 RT 2: 75866-81532 bp 3 RT 3: 149520-161042 bp Neighborhood of RT #1 [47170, 55991] RVT-GII PIN_LabA RVT_N RVT-GII GIIM HNHc MoxR Neighborhood of RT #2 [75866, 81708] RVT-GII GIIM COG3666 DDE_Tnp_1_6 COG3547 Neighborhood of RT #3 [149520, 161042] DEXHc_Snf DEXDc_RapA RVT-GII SNF2_N SF2_C_SNF RVT-GII GIIM HNHc Feature: gene Location: 47170-47640 bp Feature: gene Location: 47637-47975 bp Feature: gene Location: 48656-50578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48980-49688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48980-49688 bp Feature: gene Location: 50672-51007 bp Feature: domain Description: PIN_LabA Location: 50711-50885 bp Feature: domain Description: PIN_LabA Location: 507 11-50885 bp Feature: gene Location: 50970-51269 bp Feature: gene Location: 51821-53530 bp Feature: domain Description: RVT_N Location: 51869-52112 bp Feature: domain Description: RVT_N Location: 51869-52112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52169-52835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52169-52835 bp Feature: domain Description: GIIM Note: maturase Location: 52898-53132 bp Feature: domain Description: GIIM Note: maturase Location: 52898-53132 bp Feature: domain Description: HNHc Note: nucleases Location: 53336-53504 bp Feature: domain Description: HNHc Note: nucleases Location: 53336-53504 bp Feature: gene Location: 53637-54434 bp Feature: gene Location: 54531-55991 bp Feature: domain Description: MoxR Location: 55176-55668 bp Feature: domain Description: MoxR Location: 5517 6-55668 bp Feature: gene Location: 75866-76018 bp Feature: gene Location: 76825-77280 bp Feature: gene Location: 77293-78555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77488-78109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 7 488-7 8109 bp Feature: domain Description: GIIM Note: maturase Location: 78160-78367 bp Feature: domain Description: GIIM Note: maturase Location: 7 8160-7 8367 bp Feature: gene Location: 78672-80135 bp Feature: domain Description: COG3666 Location: 78681-79143 bp Feature: domain Description: COG3666 Location: 7 8681-7 9143 bp Feature: domain Description: DDE_Tnp_1_6 Location: 79689-80037 bp Feature: domain Description: DDE_Tnp_1_6 Location: 7 9689-80037 bp Feature: gene Location: 80407-81708 bp Feature: domain Description: COG3547 Location: 80473-81532 bp Feature: domain Description: COG3547 Location: 8047 3-81532 bp Feature: gene Location: 149520-150527 bp Feature: domain Description: DEXHc_Snf Location: 149895-150087 bp Feature: domain Description: DEXHc_Snf Location: 149895-150087 bp Feature: domain Description: DEXDc_RapA Location: 150363-150522 bp Feature: domain Description: DEXDc_RapA Location: 150363-150522 bp Feature: gene Location: 150776-150919 bp Feature: gene Location: 151138-153141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151576-152284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15157 6-152284 bp Feature: gene Location: 153381-154541 bp Feature: domain Description: SNF2_N Location: 153387-153906 bp Feature: domain Description: SNF2_N Location: 153387 -153906 bp Feature: domain Description: SF2_C_SNF Location: 153924-154329 bp Feature: domain Description: SF2_C_SNF Location: 153924-154329 bp Feature: gene Location: 154557-154892 bp Feature: gene Location: 154893-156032 bp Feature: gene Location: 157202-159079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 157502-158204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 157 502-158204 bp Feature: domain Description: GIIM Note: maturase Location: 158300-158504 bp Feature: domain Description: GIIM Note: maturase Location: 158300-158504 bp Feature: domain Description: HNHc Note: nucleases Location: 158828-158996 bp Feature: domain Description: HNHc Note: nucleases Location: 158828-158996 bp Feature: gene Location: 159415-160440 bp Feature: gene Location: 160629-161042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PIN_LabA (cd10911), RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507), MoxR (COG0714), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), COG3547 (Transposase ), DEXHc_Snf (cd17919)
DEXDc_RapA (cd18011), SNF2_N (pfam00176), SF2_C_SNF (cd18793)