myRT

myRT report for GCA_004000985.1_ASM400098v1

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Seq: BIMH01000074.1 (15621 bp)
Overview 1 RT 1: 11188-15620 bp Neighborhood of RT #1 [11188, 15620] PRK00772 ARO8 RVT-GII GIIM Feature: gene Location: 11188-12267 bp Feature: domain Description: PRK00772 Location: 11203-12262 bp Feature: domain Description: PRK00772 Location: 1 1 203-1 2262 bp Feature: gene Location: 12505-13710 bp Feature: domain Description: ARO8 Location: 12547-13687 bp Feature: domain Description: ARO8 Location: 1 2547-1 3687 bp Feature: gene Location: 13774-15210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14116-14734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 1 6-1 4734 bp Feature: domain Description: GIIM Note: maturase Location: 14785-14998 bp Feature: domain Description: GIIM Note: maturase Location: 1 4785-1 4998 bp Feature: gene Location: 15483-15620 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00772 (3-isopropylmalate dehydrogenase; Provisional), ARO8 (COG1167), RVT-GII, GIIM (pfam08388)

Seq: BIMH01000017.1 (97473 bp)
Overview 1 RT 1: 72912-75730 bp Neighborhood of RT #1 [72912, 75750] HTH_36 RVT-GII GIIM HTH_36 Feature: gene Location: 72912-73178 bp Feature: domain Description: HTH_36 Location: 72963-73116 bp Feature: domain Description: HTH_36 Location: 72 963-73116 bp Feature: gene Location: 73200-73478 bp Feature: gene Location: 73675-75087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74026-74644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7402 6-74644 bp Feature: domain Description: GIIM Note: maturase Location: 74698-74914 bp Feature: domain Description: GIIM Note: maturase Location: 74698-74914 bp Feature: gene Location: 75164-75322 bp Feature: gene Location: 75574-75750 bp Feature: domain Description: HTH_36 Location: 75619-75730 bp Feature: domain Description: HTH_36 Location: 75619-75730 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_36 (pfam13730), RVT-GII, GIIM (pfam08388)

Seq: BIMH01000114.1 (1761 bp)
Overview 1 RT 1: 3-1498 bp Neighborhood of RT #1 [3, 1677] RVT-GII GIIM Feature: gene Location: 3-188 bp Feature: gene Location: 265-1677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 616-1234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 616-123 4 bp Feature: domain Description: GIIM Note: maturase Location: 1288-1498 bp Feature: domain Description: GIIM Note: maturase Location: 1288-1498 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BIMH01000009.1 (138281 bp)
Overview 1 RT 1: 740-12197 bp Neighborhood of RT #1 [740, 12331] sbcd SbcD_C addA_Gpos addA_Gpos RVT-GII Intron_maturas2 addA_Gpos addB_Gpos Feature: gene Location: 740-1930 bp Feature: domain Description: sbcd Location: 752-1505 bp Feature: domain Description: sbcd Location: 752-1505 bp Feature: domain Description: SbcD_C Location: 1571-1847 bp Feature: domain Description: SbcD_C Location: 1571-184 7 bp Feature: gene Location: 1974-4748 bp Feature: domain Description: addA_Gpos Location: 1977-2754 bp Feature: domain Description: addA_Gpos Location: 1977-2754 bp Feature: domain Description: addA_Gpos Location: 2946-4743 bp Feature: domain Description: addA_Gpos Location: 294 6-4 74 3 bp Feature: gene Location: 4898-6718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5162-5987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5162-5987 bp Feature: domain Description: Intron_maturas2 Location: 6158-6362 bp Feature: domain Description: Intron_maturas2 Location: 6158-6362 bp Feature: gene Location: 7302-8651 bp Feature: domain Description: addA_Gpos Location: 7338-8643 bp Feature: domain Description: addA_Gpos Location: 7338-864 3 bp Feature: gene Location: 8648-12331 bp Feature: domain Description: addB_Gpos Location: 8651-12197 bp Feature: domain Description: addB_Gpos Location: 8651-12197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sbcd (TIGR00619), SbcD_C (pfam12320), addA_Gpos (TIGR02785), RVT-GII, Intron_maturas2 (pfam01348), addB_Gpos (TIGR02773)

Seq: BIMH01000027.1 (68429 bp)
Overview 1 RT 1: 63677-68406 bp Neighborhood of RT #1 [63677, 68426] PRK06169 COG1878 RVT-GII GIIM GntR Feature: gene Location: 63677-65089 bp Feature: domain Description: PRK06169 Location: 63683-65057 bp Feature: domain Description: PRK06169 Location: 63683-65 05 7 bp Feature: gene Location: 65142-65843 bp Feature: domain Description: COG1878 Location: 65151-65835 bp Feature: domain Description: COG1878 Location: 65 15 1-65 835 bp Feature: gene Location: 66405-67709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66711-67344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66711-67344 bp Feature: domain Description: GIIM Note: maturase Location: 67425-67653 bp Feature: domain Description: GIIM Note: maturase Location: 67425 -6765 3 bp Feature: gene Location: 68289-68426 bp Feature: domain Description: GntR Location: 68298-68406 bp Feature: domain Description: GntR Location: 68298-68406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06169 (putative amidase; Provisional), COG1878 (Kynurenine formamidase ), RVT-GII, GIIM (pfam08388), GntR (pfam00392)

Seq: BIMH01000028.1 (67796 bp)
Overview 1 RT 1: 11533-26074 bp Neighborhood of RT #1 [11533, 27423] DECH_helic YprA RVT-UG2 UvrD UvrD YprA YprA YprA Feature: gene Location: 11533-14295 bp Feature: domain Description: DECH_helic Location: 11881-14269 bp Feature: domain Description: DECH_helic Location: 11881-1426 9 bp Feature: gene Location: 14298-16982 bp Feature: domain Description: YprA Location: 14559-16971 bp Feature: domain Description: YprA Location: 14559-16 971 bp Feature: gene Location: 17161-18585 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 17449-18286 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 17449-18286 bp Feature: gene Location: 18986-21076 bp Feature: domain Description: UvrD Location: 19700-20753 bp Feature: domain Description: UvrD Location: 19700-20753 bp Feature: domain Description: UvrD Location: 20765-21044 bp Feature: domain Description: UvrD Location: 2076 5-21044 bp Feature: gene Location: 21076-27423 bp Feature: domain Description: YprA Location: 21289-21979 bp Feature: domain Description: YprA Location: 21289-21979 bp Feature: domain Description: YprA Location: 24106-24415 bp Feature: domain Description: YprA Location: 24106 -24415 bp Feature: domain Description: YprA Location: 25807-26074 bp Feature: domain Description: YprA Location: 25807-26 074 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DECH_helic (TIGR03817), YprA (COG1205), RVT-UG2, UvrD (COG0210)