myRT

myRT report for GCA_004001395.1_ASM400139v1

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Seq: RPHN01000234.1 (3213 bp)
Overview 1 RT 1: 31-1868 bp Neighborhood of RT #1 [31, 1868] RVT-GII GIIM COG3547 Feature: gene Location: 31-585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40-250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40-250 bp Feature: domain Description: GIIM Note: maturase Location: 325-532 bp Feature: domain Description: GIIM Note: maturase Location: 325-532 bp Feature: gene Location: 633-1574 bp Feature: domain Description: COG3547 Location: 666-1512 bp Feature: domain Description: COG3547 Location: 666-1 51 2 bp Feature: gene Location: 1611-1868 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: RPHN01000256.1 (1703 bp)
Overview 1 RT 1: 12-1496 bp Neighborhood of RT #1 [12, 1588] DDE_Tnp_IS66 RVT-GII GIIM Feature: gene Location: 12-737 bp Feature: domain Description: DDE_Tnp_IS66 Location: 45-657 bp Feature: domain Description: DDE_Tnp_IS66 Location: 45-657 bp Feature: gene Location: 791-1588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 794-1199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 794-1199 bp Feature: domain Description: GIIM Note: maturase Location: 1280-1496 bp Feature: domain Description: GIIM Note: maturase Location: 12 80-1496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388)

Seq: RPHN01000063.1 (41114 bp)
Overview 1 RT 1: 1338-12606 bp Neighborhood of RT #1 [1338, 12606] COG3183 RVT-Retrons Trypsin_2 NERD STKc_PknB_like STKc_PknB_like KOG1802 KOG1802 Feature: gene Location: 1338-1730 bp Feature: gene Location: 1780-3705 bp Feature: domain Description: COG3183 Location: 3325-3559 bp Feature: domain Description: COG3 183 Location: 3 3 25-3 559 bp Feature: gene Location: 4072-5664 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4240-4831 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4240-483 1 bp Feature: domain Description: Trypsin_2 Location: 5179-5587 bp Feature: domain Description: Trypsin_2 Location: 5179-5587 bp Feature: gene Location: 6324-11129 bp Feature: domain Description: NERD Location: 6369-6699 bp Feature: domain Description: NERD Location: 63 69-6699 bp Feature: domain Description: STKc_PknB_like Location: 7233-7578 bp Feature: domain Description: STKc_PknB_like Location: 723 3 -7578 bp Feature: domain Description: STKc_PknB_like Location: 8022-8298 bp Feature: domain Description: STKc_PknB_like Location: 8022-8298 bp Feature: domain Description: KOG1802 Location: 9399-9603 bp Feature: domain Description: KOG1802 Location: 93 99-9603 bp Feature: domain Description: KOG1802 Location: 10116-11013 bp Feature: domain Description: KOG1802 Location: 10116-11013 bp Feature: gene Location: 11233-12606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3183 (Predicted restriction endonuclease, HNH family ), RVT-Retrons, Trypsin_2 (pfam13365), NERD (pfam08378), STKc_PknB_like (cd14014), KOG1802 (KOG1802, RNA helicase nonsense mRNA reducing factor (pNORF1) )

Seq: RPHN01000245.1 (2241 bp)
Overview 1 RT 1: 2-1204 bp Neighborhood of RT #1 [2, 1572] RVT-GII Feature: gene Location: 2-268 bp Feature: gene Location: 265-1572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 517-1204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 517-1204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RPHN01000193.1 (7326 bp)
Overview 1 RT 1: 1-1258 bp Neighborhood of RT #1 [1, 1258] RVT-GII Feature: gene Location: 1-552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217-460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217-460 bp Feature: gene Location: 61-1005 bp Feature: gene Location: 1037-1258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RPHN01000178.1 (8971 bp)
Overview 1 RT 1: 2-1214 bp Neighborhood of RT #1 [2, 1300] RVT-GII Sigma70_r4_2 DDE_3 Feature: gene Location: 2-229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-209 bp Feature: gene Location: 286-516 bp Feature: domain Description: Sigma70_r4_2 Location: 334-442 bp Feature: domain Description: Sigma70_r4_2 Location: 334-442 bp Feature: gene Location: 1007-1300 bp Feature: domain Description: DDE_3 Location: 1025-1214 bp Feature: domain Description: DDE_3 Location: 1025-1214 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Sigma70_r4_2 (pfam08281), DDE_3 (pfam13358)