myRT

myRT report for GCA_004001855.1_ASM400185v1

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Seq: RPIK01000091.1 (16560 bp)
Overview 1 RT 1: 8733-16399 bp Neighborhood of RT #1 [8733, 16399] NERD STKc_PknB_like STKc_PknB_like KOG1802 KOG1802 RVT-Retrons Trypsin_2 Feature: gene Location: 8733-13538 bp Feature: domain Description: NERD Location: 8778-9108 bp Feature: domain Description: NERD Location: 8778-91 08 bp Feature: domain Description: STKc_PknB_like Location: 9642-9987 bp Feature: domain Description: STKc_PknB_like Location: 9642-9987 bp Feature: domain Description: STKc_PknB_like Location: 10431-10707 bp Feature: domain Description: STKc_PknB_like Location: 1 0431 -1 0707 bp Feature: domain Description: KOG1802 Location: 11808-12012 bp Feature: domain Description: KOG1 802 Location: 1 1 808-1 201 2 bp Feature: domain Description: KOG1802 Location: 12525-13422 bp Feature: domain Description: KOG1 802 Location: 1 2525-1 3422 bp Feature: gene Location: 13731-13979 bp Feature: gene Location: 14198-15790 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14366-14957 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 4366-1 4957 bp Feature: domain Description: Trypsin_2 Location: 15305-15713 bp Feature: domain Description: Trypsin_2 Location: 1 5305-1 571 3 bp Feature: gene Location: 16157-16399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), STKc_PknB_like (cd14014), KOG1802 (KOG1802, RNA helicase nonsense mRNA reducing factor (pNORF1) ), RVT-Retrons, Trypsin_2 (pfam13365)

Seq: RPIK01000033.1 (57944 bp)
Overview 1 RT 1: 54012-57619 bp Neighborhood of RT #1 [54012, 57619] RVT-GII rve Feature: gene Location: 54012-54161 bp Feature: gene Location: 54286-54948 bp Feature: gene Location: 55446-56075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55773-55929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55773-5592 9 bp Feature: gene Location: 56054-57358 bp Feature: domain Description: rve Location: 56546-56873 bp Feature: domain Description: rve Location: 56546-56873 bp Feature: gene Location: 57419-57619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, rve (pfam00665)

Seq: RPIK01000174.1 (2031 bp)
Overview 1 RT 1: 119-1523 bp Neighborhood of RT #1 [119, 1636] RVT-GII GIIM Feature: gene Location: 119-1636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422-1184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422-1184 bp Feature: domain Description: GIIM Note: maturase Location: 1253-1523 bp Feature: domain Description: GIIM Note: maturase Location: 1253 -1523 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: RPIK01000095.1 (15342 bp)
Overview 1 RT 1: 4591-9444 bp Neighborhood of RT #1 [4591, 9506] PBP2_polyamine_RpCGA009 RVT-GII RVT-GII RVT-GII PBP2_NikA_DppA_OppA_like_17 Feature: gene Location: 4591-5679 bp Feature: domain Description: PBP2_polyamine_RpCGA009 Location: 4711-5509 bp Feature: domain Description: PBP2_polyamine_RpCGA009 Location: 4 711-5509 bp Feature: gene Location: 5799-6074 bp Feature: gene Location: 6077-6448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6305-6407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6305-64 07 bp Feature: gene Location: 6456-6833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6462-6732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64 62-6732 bp Feature: gene Location: 6655-7131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6730-6925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6730-6925 bp Feature: gene Location: 7270-7536 bp Feature: gene Location: 7917-9506 bp Feature: domain Description: PBP2_NikA_DppA_OppA_like_17 Location: 8067-9444 bp Feature: domain Description: PBP2_NikA_DppA_OppA_like_17 Location: 8067-94 4 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_polyamine_RpCGA009 (cd13589), RVT-GII, PBP2_NikA_DppA_OppA_like_17 (cd08503)

Seq: RPIK01000104.1 (12324 bp)
Overview 1 RT 1: 9790-12315 bp Neighborhood of RT #1 [9790, 12315] RVT-GII Feature: gene Location: 9790-9918 bp Feature: gene Location: 9949-10146 bp Feature: gene Location: 10513-11922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10867-11554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10867-115 5 4 bp Feature: gene Location: 12055-12315 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RPIK01000171.1 (2230 bp)
Overview 1 RT 1: 2-1241 bp Neighborhood of RT #1 [2, 1432] RVT-GII GIIM Feature: gene Location: 2-166 bp Feature: gene Location: 173-1432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36 5-986 bp Feature: domain Description: GIIM Note: maturase Location: 1034-1241 bp Feature: domain Description: GIIM Note: maturase Location: 1034-1241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)