myRT

myRT report for GCA_004002455.1_ASM400245v1

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Seq: RPKJ01000009.1 (143192 bp)
Overview 1 RT 1: 3-2520 bp Neighborhood of RT #1 [3, 2636] RVT-GII RVT-GII AraJ HTH_ARSR Feature: gene Location: 3-164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-1 62 bp Feature: gene Location: 239-817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 566-788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 566-788 bp Feature: gene Location: 994-2175 bp Feature: domain Description: AraJ Location: 997-2155 bp Feature: domain Description: AraJ Location: 997-21 55 bp Feature: gene Location: 2265-2636 bp Feature: domain Description: HTH_ARSR Location: 2322-2520 bp Feature: domain Description: HTH_ARSR Location: 2322-2520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, AraJ (COG2814), HTH_ARSR (smart00418)

Seq: RPKJ01000070.1 (28484 bp)
Overview 1 RT 1: 23135-27989 bp Neighborhood of RT #1 [23135, 28051] PBP2_polyamine_RpCGA009 RVT-GII RVT-GII RVT-GII PBP2_NikA_DppA_OppA_like_17 Feature: gene Location: 23135-24223 bp Feature: domain Description: PBP2_polyamine_RpCGA009 Location: 23255-24053 bp Feature: domain Description: PBP2 _polyamine_RpCGA009 Location: 2 32 55-2 4053 bp Feature: gene Location: 24344-24619 bp Feature: gene Location: 24622-24993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24850-24952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4850-2 4952 bp Feature: gene Location: 25001-25378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25007-25277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5007-2 52 77 bp Feature: gene Location: 25200-25676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25275-25470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 52 75-2 5470 bp Feature: gene Location: 25815-26081 bp Feature: gene Location: 26462-28051 bp Feature: domain Description: PBP2_NikA_DppA_OppA_like_17 Location: 26612-27989 bp Feature: domain Description: PBP2 _NikA_DppA_OppA_like_17 Location: 2 6612 -2 7989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_polyamine_RpCGA009 (cd13589), RVT-GII, PBP2_NikA_DppA_OppA_like_17 (cd08503)

Seq: RPKJ01000007.1 (150069 bp)
Overview 1 RT 1: 146685-149900 bp Neighborhood of RT #1 [146685, 149986] COG3415 RVT-GII GIIM Feature: gene Location: 146685-147305 bp Feature: gene Location: 147725-148132 bp Feature: domain Description: COG3415 Location: 147728-148130 bp Feature: domain Description: COG3 415 Location: 147728-14813 0 bp Feature: gene Location: 148778-149986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148943-149597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148943 -149597 bp Feature: domain Description: GIIM Note: maturase Location: 149678-149900 bp Feature: domain Description: GIIM Note: maturase Location: 149678-149900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: RPKJ01000059.1 (36798 bp)
Overview 1 RT 1: 2516-6588 bp Neighborhood of RT #1 [2516, 6588] TnpB_IS66 Phage_int_SAM_1 INT_RitA_C_like RVT-GII GIIM Feature: gene Location: 2516-2710 bp Feature: domain Description: TnpB_IS66 Location: 2519-2675 bp Feature: domain Description: TnpB_IS66 Location: 2519-2675 bp Feature: gene Location: 2874-4166 bp Feature: domain Description: Phage_int_SAM_1 Location: 3276-3528 bp Feature: domain Description: Phage_int_SAM_1 Location: 3276-3528 bp Feature: domain Description: INT_RitA_C_like Location: 3609-4143 bp Feature: domain Description: INT_RitA_C_like Location: 3609-4 14 3 bp Feature: gene Location: 4529-5965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4898-5519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 898-5519 bp Feature: domain Description: GIIM Note: maturase Location: 5567-5774 bp Feature: domain Description: GIIM Note: maturase Location: 5567-5774 bp Feature: gene Location: 6041-6286 bp Feature: gene Location: 6319-6588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), RVT-GII, GIIM (pfam08388)