myRT

myRT report for GCA_004002595.1_ASM400259v1

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Seq: RPJK01000002.1 (452356 bp)
Overview 1 RT 1: 55253-60961 bp Neighborhood of RT #1 [55253, 60961] Hit PLDc_N_DEXD_b3 SSL2 DUF3427 RVT-Retrons Feature: gene Location: 55253-55471 bp Feature: gene Location: 55626-59210 bp Feature: domain Description: Hit Location: 55704-56046 bp Feature: domain Description: Hit Location: 55704-56046 bp Feature: domain Description: PLDc_N_DEXD_b3 Location: 56124-56544 bp Feature: domain Description: PLDc_N_DEXD_b3 Location: 561 24-56544 bp Feature: domain Description: SSL2 Location: 56655-57684 bp Feature: domain Description: SSL2 Location: 56655-57684 bp Feature: domain Description: DUF3427 Location: 58764-59199 bp Feature: domain Description: DUF3427 Location: 58764-591 99 bp Feature: gene Location: 59391-60341 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59496-60078 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59496-60078 bp Feature: gene Location: 60341-60961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Hit (COG0537), PLDc_N_DEXD_b3 (cd09205), SSL2 (COG1061), DUF3427 (pfam11907), RVT-Retrons

Seq: RPJK01000026.1 (76765 bp)
Overview 1 RT 1: 69938-72362 bp Neighborhood of RT #1 [69938, 72362] antidote_CC2985 RVT-GII COG3415 Feature: gene Location: 69938-70204 bp Feature: domain Description: antidote_CC2985 Location: 69941-70148 bp Feature: domain Description: antidote_CC2 985 Location: 69941-70148 bp Feature: gene Location: 70311-70601 bp Feature: gene Location: 70732-71274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70804-71086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70804-71086 bp Feature: gene Location: 71730-72116 bp Feature: domain Description: COG3415 Location: 71739-72087 bp Feature: domain Description: COG3415 Location: 71739-72 087 bp Feature: gene Location: 72198-72362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT antidote_CC2985 (TIGR02606), RVT-GII, COG3415 (Transposase )

Seq: RPJK01000059.1 (18570 bp)
Overview 1 RT 1: 3027-11873 bp Neighborhood of RT #1 [3027, 11873] DNA2 TPR TPR CHAT RVT-UG20 Feature: gene Location: 3027-3242 bp Feature: domain Description: DNA2 Location: 3048-3228 bp Feature: domain Description: DNA2 Location: 3 048-3 228 bp Feature: gene Location: 3395-7183 bp Feature: domain Description: TPR Location: 4178-4493 bp Feature: domain Description: TPR Location: 4178-4493 bp Feature: domain Description: TPR Location: 5294-5483 bp Feature: domain Description: TPR Location: 5294-5483 bp Feature: domain Description: CHAT Location: 6437-7091 bp Feature: domain Description: CHAT Location: 643 7-7091 bp Feature: gene Location: 7398-9011 bp Feature: RT Description: RVT-UG20 Note: UG20 RT Location: 7746-8244 bp Feature: RT Description: RVT-UG20 Note: UG20 RT Location: 7746-8244 bp Feature: gene Location: 9084-9554 bp Feature: gene Location: 9984-11873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DNA2 (COG1112), TPR (smart00028), CHAT (pfam12770), RVT-UG20