myRT

myRT report for GCA_004002835.1_ASM400283v1

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Seq: RPKL01000004.1 (143865 bp)
Overview 1 RT 1: 141319-143864 bp Neighborhood of RT #1 [141319, 143863] HTH_ARSR AraJ RVT-GII Feature: gene Location: 141319-141690 bp Feature: domain Description: HTH_ARSR Location: 141376-141574 bp Feature: domain Description: HTH_ARSR Location: 1 41 376-1 41 574 bp Feature: gene Location: 141780-142964 bp Feature: domain Description: AraJ Location: 141783-142941 bp Feature: domain Description: AraJ Location: 1 41 783-1 42941 bp Feature: gene Location: 143141-143863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143468-143864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 43468-1 43864 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), AraJ (COG2814), RVT-GII

Seq: RPKL01000222.1 (1950 bp)
Overview 1 RT 1: 469-1486 bp Neighborhood of RT #1 [469, 1866] RVT-GII Feature: gene Location: 469-1866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 796-1486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 796-1486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RPKL01000128.1 (13738 bp)
Overview 1 RT 1: 46-3558 bp Neighborhood of RT #1 [46, 3647] RVT-GII GIIM CirA Feature: gene Location: 46-1254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 211-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 211-865 bp Feature: domain Description: GIIM Note: maturase Location: 946-1162 bp Feature: domain Description: GIIM Note: maturase Location: 946-1162 bp Feature: gene Location: 850-1758 bp Feature: gene Location: 1818-3647 bp Feature: domain Description: CirA Location: 1824-3558 bp Feature: domain Description: CirA Location: 1824-3 558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CirA (COG1629)

Seq: RPKL01000201.1 (2837 bp)
Overview 1 RT 1: 2-2666 bp Neighborhood of RT #1 [2, 2836] COG3367 PdxK RVT-GII Feature: gene Location: 2-802 bp Feature: domain Description: COG3367 Location: 5-794 bp Feature: domain Description: COG3367 Location: 5-794 bp Feature: gene Location: 1409-2287 bp Feature: domain Description: PdxK Location: 1430-2225 bp Feature: domain Description: PdxK Location: 14 30-2225 bp Feature: gene Location: 2456-2836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2459-2666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 59-2666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3367 (Uncharacterized conserved protein, NAD-dependent epimerase/dehydratase family ), PdxK (COG2240), RVT-GII

Seq: RPKL01000168.1 (5524 bp)
Overview 1 RT 1: 3761-5155 bp Neighborhood of RT #1 [3761, 5523] RutF RVT-GII Feature: gene Location: 3761-4453 bp Feature: domain Description: RutF Location: 3785-4250 bp Feature: domain Description: RutF Location: 3785 -425 0 bp Feature: gene Location: 4450-4611 bp Feature: gene Location: 4837-5523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4966-5155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4966-5 15 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RutF (TIGR03615), RVT-GII

Seq: RPKL01000216.1 (2102 bp)
Overview 1 RT 1: 119-1664 bp Neighborhood of RT #1 [119, 1664] RVT-GII GIIM Feature: gene Location: 119-1378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323-980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323-980 bp Feature: domain Description: GIIM Note: maturase Location: 1061-1280 bp Feature: domain Description: GIIM Note: maturase Location: 106 1-1280 bp Feature: gene Location: 1377-1664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: RPKL01000217.1 (2082 bp)
Overview 1 RT 1: 646-1819 bp Neighborhood of RT #1 [646, 1905] RVT-GII GIIM Feature: gene Location: 646-1905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862-1516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862-1516 bp Feature: domain Description: GIIM Note: maturase Location: 1597-1819 bp Feature: domain Description: GIIM Note: maturase Location: 1597 -1819 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)