myRT

myRT report for GCA_004003085.1_ASM400308v1

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Seq: RPKM01000142.1 (14590 bp)
Overview 1 RT 1: 1417-5109 bp Neighborhood of RT #1 [1417, 5156] Transposase_mut RVT-GII PRK07574 Feature: gene Location: 1417-1857 bp Feature: domain Description: Transposase_mut Location: 1420-1771 bp Feature: domain Description: Transposase_mut Location: 1 420-1 771 bp Feature: gene Location: 2248-2697 bp Feature: gene Location: 2703-3608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2706-3357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2706-3357 bp Feature: gene Location: 3693-3866 bp Feature: gene Location: 3951-5156 bp Feature: domain Description: PRK07574 Location: 3960-5109 bp Feature: domain Description: PRK07574 Location: 3960-51 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_mut (pfam00872), RVT-GII, PRK07574 (NAD-dependent formate dehydrogenase)

Seq: RPKM01000048.1 (44378 bp)
Overview 1 RT 1: 3-2339 bp Neighborhood of RT #1 [3, 2359] RVT-GII RVT-GII DUF982 Feature: gene Location: 3-320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-2 91 bp Feature: gene Location: 395-973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722-944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 2 -944 bp Feature: gene Location: 1753-2055 bp Feature: gene Location: 2099-2359 bp Feature: domain Description: DUF982 Location: 2132-2339 bp Feature: domain Description: DUF982 Location: 2 132 -2 339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF982 (pfam06169)

Seq: RPKM01000152.1 (11534 bp)
Overview 1 RT 1: 9302-11453 bp Neighborhood of RT #1 [9302, 11530] Transposase_mut RVT-GII Feature: gene Location: 9302-9931 bp Feature: domain Description: Transposase_mut Location: 9419-9902 bp Feature: domain Description: Transposase_mut Location: 9419-9902 bp Feature: gene Location: 10071-10319 bp Feature: gene Location: 10511-11530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10814-11453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10814-11453 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_mut (pfam00872), RVT-GII

Seq: RPKM01000073.1 (31473 bp)
Overview 1 RT 1: 102-1714 bp 2 RT 2: 19410-25089 bp Neighborhood of RT #1 [102, 1714] RVT-GII GIIM Transposase_mut Neighborhood of RT #2 [19410, 25325] RVT-UG12 YjgR YjgR SIR2_2 Feature: gene Location: 102-698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111-246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111-24 6 bp Feature: domain Description: GIIM Note: maturase Location: 318-534 bp Feature: domain Description: GIIM Note: maturase Location: 318-534 bp Feature: gene Location: 795-1508 bp Feature: domain Description: Transposase_mut Location: 798-1410 bp Feature: domain Description: Transposase_mut Location: 798-14 10 bp Feature: gene Location: 1511-1714 bp Feature: gene Location: 19410-19766 bp Feature: gene Location: 19889-20164 bp Feature: gene Location: 20446-22155 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 20803-21250 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 20803-21250 bp Feature: gene Location: 22214-23929 bp Feature: domain Description: YjgR Location: 22397-22856 bp Feature: domain Description: YjgR Location: 22397-22856 bp Feature: domain Description: YjgR Location: 23468-23885 bp Feature: domain Description: YjgR Location: 234 68-23885 bp Feature: gene Location: 23922-25325 bp Feature: domain Description: SIR2_2 Location: 24648-25089 bp Feature: domain Description: SIR2_2 Location: 24 64 8-25089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Transposase_mut (pfam00872), RVT-UG12, YjgR (COG0433), SIR2_2 (pfam13289)

Seq: RPKM01000212.1 (1896 bp)
Overview 1 RT 1: 80-1893 bp Neighborhood of RT #1 [80, 1893] RVT-GII GIIM Feature: gene Location: 80-1339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 296-947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 296-947 bp Feature: domain Description: GIIM Note: maturase Location: 1031-1253 bp Feature: domain Description: GIIM Note: maturase Location: 1031-125 3 bp Feature: gene Location: 1555-1686 bp Feature: gene Location: 1756-1893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: RPKM01000213.1 (1886 bp)
Overview 1 RT 1: 80-1253 bp Neighborhood of RT #1 [80, 1339] RVT-GII GIIM Feature: gene Location: 80-1339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 296-950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 296 -950 bp Feature: domain Description: GIIM Note: maturase Location: 1031-1253 bp Feature: domain Description: GIIM Note: maturase Location: 1031-1253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: RPKM01000040.1 (52351 bp)
Overview 1 RT 1: 28702-34611 bp Neighborhood of RT #1 [28702, 34751] ZapB DDE_Tnp_IS66 DDE_Tnp_IS66 RVT-Retrons UvrD UvrD Feature: gene Location: 28702-30369 bp Feature: domain Description: ZapB Location: 28777-28921 bp Feature: domain Description: ZapB Location: 287 7 7 -28921 bp Feature: domain Description: DDE_Tnp_IS66 Location: 29236-29461 bp Feature: domain Description: DDE_Tnp_IS66 Location: 29236-29461 bp Feature: domain Description: DDE_Tnp_IS66 Location: 29809-30220 bp Feature: domain Description: DDE_Tnp_IS66 Location: 29809-30220 bp Feature: gene Location: 30371-30691 bp Feature: gene Location: 31143-32876 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31278-31905 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3127 8-31905 bp Feature: gene Location: 33195-33368 bp Feature: gene Location: 33411-34751 bp Feature: domain Description: UvrD Location: 33417-33768 bp Feature: domain Description: UvrD Location: 33417 -337 68 bp Feature: domain Description: UvrD Location: 34386-34611 bp Feature: domain Description: UvrD Location: 34386-34611 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ZapB (pfam06005), DDE_Tnp_IS66 (pfam03050), RVT-Retrons, UvrD (COG0210)