myRT

myRT report for GCA_004003335.1_ASM400333v1

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Seq: RPLN01000118.1 (15898 bp)
Overview 1 RT 1: 326-3659 bp Neighborhood of RT #1 [326, 3659] rve RVT-GII Feature: gene Location: 326-526 bp Feature: gene Location: 587-1891 bp Feature: domain Description: rve Location: 1079-1406 bp Feature: domain Description: rve Location: 1 079-1 406 bp Feature: gene Location: 1870-2499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2197-2353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 97-2353 bp Feature: gene Location: 2729-2881 bp Feature: gene Location: 2997-3659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), RVT-GII

Seq: RPLN01000195.1 (3364 bp)
Overview 1 RT 1: 2-2069 bp Neighborhood of RT #1 [2, 2069] RVT-GII Transposase_20 Feature: gene Location: 2-370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32-146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 -146 bp Feature: domain Description: Transposase_20 Location: 155-368 bp Feature: domain Description: Transposase_2 0 Location: 155-368 bp Feature: gene Location: 906-2483 bp Feature: gene Location: 1845-2069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Transposase_20 (pfam02371)

Seq: RPLN01000218.1 (1653 bp)
Overview 1 RT 1: 2-1515 bp Neighborhood of RT #1 [2, 1515] RVT-GII Feature: gene Location: 2-961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-566 bp Feature: gene Location: 1357-1515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RPLN01000105.1 (20950 bp)
Overview 1 RT 1: 13171-19048 bp Neighborhood of RT #1 [13171, 19048] partition_RepA PRK13834 RVT-GII LysR Feature: gene Location: 13171-14610 bp Feature: domain Description: partition_RepA Location: 13447-14602 bp Feature: domain Description: partition_RepA Location: 134 4 7-14 602 bp Feature: gene Location: 14752-15321 bp Feature: domain Description: PRK13834 Location: 14755-15274 bp Feature: domain Description: PRK13834 Location: 14 755-15274 bp Feature: gene Location: 16101-17510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16455-17142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164 55-1714 2 bp Feature: gene Location: 17629-18519 bp Feature: domain Description: LysR Location: 17641-18511 bp Feature: domain Description: LysR Location: 1764 1-18511 bp Feature: gene Location: 18704-19048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT partition_RepA (TIGR03453), PRK13834 (putative autoinducer synthesis protein; Provisional), RVT-GII, LysR (COG0583)

Seq: RPLN01000020.1 (88591 bp)
Overview 1 RT 1: 1-2879 bp Neighborhood of RT #1 [1, 2995] RVT-GII GIIM AraJ HTH_ARSR Feature: gene Location: 1-1173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-943 bp Feature: domain Description: GIIM Note: maturase Location: 997-1171 bp Feature: domain Description: GIIM Note: maturase Location: 997-1171 bp Feature: gene Location: 1350-2534 bp Feature: domain Description: AraJ Location: 1353-2511 bp Feature: domain Description: AraJ Location: 135 3-25 11 bp Feature: gene Location: 2624-2995 bp Feature: domain Description: HTH_ARSR Location: 2681-2879 bp Feature: domain Description: HTH_ARSR Location: 2681-2879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), AraJ (COG2814), HTH_ARSR (smart00418)

Seq: RPLN01000223.1 (1418 bp)
Overview 1 RT 1: 1-1323 bp Neighborhood of RT #1 [1, 1323] RVT-GII Feature: gene Location: 1-870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217-871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217-871 bp Feature: gene Location: 415-1323 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII