myRT

myRT report for GCA_004003345.1_ASM400334v1

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Seq: RPLQ01000044.1 (52782 bp)
Overview 1 RT 1: 28702-34611 bp Neighborhood of RT #1 [28702, 34751] ZapB DDE_Tnp_IS66 DDE_Tnp_IS66 RVT-Retrons UvrD UvrD Feature: gene Location: 28702-30369 bp Feature: domain Description: ZapB Location: 28777-28921 bp Feature: domain Description: ZapB Location: 28777-28921 bp Feature: domain Description: DDE_Tnp_IS66 Location: 29236-29461 bp Feature: domain Description: DDE_Tnp_IS66 Location: 29236-29461 bp Feature: domain Description: DDE_Tnp_IS66 Location: 29809-30220 bp Feature: domain Description: DDE_Tnp_IS66 Location: 29809-30220 bp Feature: gene Location: 30371-30691 bp Feature: gene Location: 31143-32876 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31278-31905 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 278-31 905 bp Feature: gene Location: 33195-33368 bp Feature: gene Location: 33411-34751 bp Feature: domain Description: UvrD Location: 33417-33768 bp Feature: domain Description: UvrD Location: 3341 7-33768 bp Feature: domain Description: UvrD Location: 34386-34611 bp Feature: domain Description: UvrD Location: 34386-3461 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ZapB (pfam06005), DDE_Tnp_IS66 (pfam03050), RVT-Retrons, UvrD (COG0210)

Seq: RPLQ01000146.1 (11536 bp)
Overview 1 RT 1: 7-2206 bp Neighborhood of RT #1 [7, 2235] RVT-GII Transposase_mut Feature: gene Location: 7-1026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 310-949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 310-949 bp Feature: gene Location: 1218-1466 bp Feature: gene Location: 1606-2235 bp Feature: domain Description: Transposase_mut Location: 1723-2206 bp Feature: domain Description: Transposase_mut Location: 172 3-2 2 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Transposase_mut (pfam00872)

Seq: RPLQ01000134.1 (14626 bp)
Overview 1 RT 1: 8291-12703 bp Neighborhood of RT #1 [8291, 12703] RmlC PRK07574 RVT-GII Feature: gene Location: 8291-8794 bp Feature: domain Description: RmlC Location: 8339-8780 bp Feature: domain Description: RmlC Location: 83 3 9-8780 bp Feature: gene Location: 9471-10676 bp Feature: domain Description: PRK07574 Location: 9480-10629 bp Feature: domain Description: PRK07574 Location: 9480-10629 bp Feature: gene Location: 11019-11924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11022-11673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11022-11673 bp Feature: gene Location: 11930-12379 bp Feature: gene Location: 12443-12703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RmlC (COG4101), PRK07574 (NAD-dependent formate dehydrogenase), RVT-GII

Seq: RPLQ01000204.1 (1478 bp)
Overview 1 RT 1: 80-1253 bp Neighborhood of RT #1 [80, 1339] RVT-GII GIIM Feature: gene Location: 80-1339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 296-950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 296-950 bp Feature: domain Description: GIIM Note: maturase Location: 1031-1253 bp Feature: domain Description: GIIM Note: maturase Location: 1031-1253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: RPLQ01000081.1 (31471 bp)
Overview 1 RT 1: 6147-12062 bp 2 RT 2: 29758-31206 bp Neighborhood of RT #1 [6147, 12062] SIR2_2 YjgR YjgR RVT-UG12 Neighborhood of RT #2 [29758, 31370] Transposase_mut RVT-GII GIIM Feature: gene Location: 6147-7550 bp Feature: domain Description: SIR2_2 Location: 6873-7314 bp Feature: domain Description: SIR2_2 Location: 6873-7314 bp Feature: gene Location: 7543-9258 bp Feature: domain Description: YjgR Location: 7726-8185 bp Feature: domain Description: YjgR Location: 7726-8185 bp Feature: domain Description: YjgR Location: 8797-9214 bp Feature: domain Description: YjgR Location: 8797-9214 bp Feature: gene Location: 9317-11026 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 9674-10121 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 9674-10121 bp Feature: gene Location: 11308-11583 bp Feature: gene Location: 11706-12062 bp Feature: gene Location: 29758-29961 bp Feature: gene Location: 29964-30677 bp Feature: domain Description: Transposase_mut Location: 29967-30579 bp Feature: domain Description: Transposase_mut Location: 29967-305 79 bp Feature: gene Location: 30774-31370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30783-30918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30783-30918 bp Feature: domain Description: GIIM Note: maturase Location: 30990-31206 bp Feature: domain Description: GIIM Note: maturase Location: 30990-31206 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIR2_2 (pfam13289), YjgR (COG0433), RVT-UG12, Transposase_mut (pfam00872), RVT-GII, GIIM (pfam08388)

Seq: RPLQ01000195.1 (1896 bp)
Overview 1 RT 1: 80-1893 bp Neighborhood of RT #1 [80, 1893] RVT-GII GIIM Feature: gene Location: 80-1339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 296-947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 296 -947 bp Feature: domain Description: GIIM Note: maturase Location: 1031-1253 bp Feature: domain Description: GIIM Note: maturase Location: 1031-1253 bp Feature: gene Location: 1555-1686 bp Feature: gene Location: 1756-1893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)