myRT

myRT report for GCA_004003675.1_ASM400367v1

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Seq: RPLV01000003.1 (155625 bp)
Overview 1 RT 1: 1-2429 bp Neighborhood of RT #1 [1, 2545] RVT-GII AraJ HTH_ARSR Feature: gene Location: 1-723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-724 bp Feature: gene Location: 900-2084 bp Feature: domain Description: AraJ Location: 903-2061 bp Feature: domain Description: AraJ Location: 903-2061 bp Feature: gene Location: 2174-2545 bp Feature: domain Description: HTH_ARSR Location: 2231-2429 bp Feature: domain Description: HTH_ARSR Location: 2231 -2429 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, AraJ (COG2814), HTH_ARSR (smart00418)

Seq: RPLV01000164.1 (8861 bp)
Overview 1 RT 1: 896-4999 bp Neighborhood of RT #1 [896, 5034] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 Feature: gene Location: 896-1369 bp Feature: gene Location: 1387-2448 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1420-2080 bp Feature: domain Description: DDE_Tnp_IS66 Location: 142 0-2 080 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2101-2218 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 101-2 2 18 bp Feature: gene Location: 2502-3662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2619-3273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 619-32 73 bp Feature: domain Description: GIIM Note: maturase Location: 3354-3570 bp Feature: domain Description: GIIM Note: maturase Location: 3354-3570 bp Feature: gene Location: 3566-4213 bp Feature: gene Location: 4273-5034 bp Feature: domain Description: COG3436 Location: 4522-4999 bp Feature: domain Description: COG3436 Location: 452 2 -4999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), COG3436 (Transposase )

Seq: RPLV01000224.1 (1082 bp)
Overview 1 RT 1: 646-1081 bp Neighborhood of RT #1 [646, 1080] RVT-GII Feature: gene Location: 646-1080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862-1081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862-1081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RPLV01000006.1 (131243 bp)
Overview 1 RT 1: 39636-43002 bp Neighborhood of RT #1 [39636, 43040] INT_RitA_C_like INT_RitA_C_like RVT-GII GIIM IS285 Feature: gene Location: 39636-39848 bp Feature: domain Description: INT_RitA_C_like Location: 39645-39840 bp Feature: domain Description: INT_RitA_C_like Location: 3964 5-3984 0 bp Feature: gene Location: 39845-40186 bp Feature: domain Description: INT_RitA_C_like Location: 39848-40169 bp Feature: domain Description: INT_RitA_C_like Location: 3984 8-4 0169 bp Feature: gene Location: 40797-42314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41100-41862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 1100-4 1862 bp Feature: domain Description: GIIM Note: maturase Location: 41931-42201 bp Feature: domain Description: GIIM Note: maturase Location: 4 1931-4 2201 bp Feature: gene Location: 42705-42836 bp Feature: gene Location: 42885-43040 bp Feature: domain Description: IS285 Location: 42894-43002 bp Feature: domain Description: IS285 Location: 4 2894 -4 3002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitA_C_like (cd01188), RVT-GII, GIIM (pfam08388), IS285 (COG3328)

Seq: RPLV01000193.1 (3890 bp)
Overview 1 RT 1: 1650-3549 bp Neighborhood of RT #1 [1650, 3887] RVT-GII RVT-GII Feature: gene Location: 1650-1811 bp Feature: gene Location: 2018-2257 bp Feature: gene Location: 2509-3339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2863-3241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2863-3241 bp Feature: gene Location: 3336-3887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3342-3549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3342-35 49 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII