myRT

myRT report for GCA_004003685.1_ASM400368v1

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Seq: RPLU01000002.1 (130933 bp)
Overview 1 RT 1: 87790-91601 bp Neighborhood of RT #1 [87790, 91609] IS285 RVT-GII GIIM INT_RitA_C_like INT_RitA_C_like Feature: gene Location: 87790-88215 bp Feature: gene Location: 88205-88360 bp Feature: domain Description: IS285 Location: 88214-88322 bp Feature: domain Description: IS285 Location: 8821 4-88322 bp Feature: gene Location: 88931-90448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89234-89996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89234-89996 bp Feature: domain Description: GIIM Note: maturase Location: 90065-90335 bp Feature: domain Description: GIIM Note: maturase Location: 90065-90335 bp Feature: gene Location: 91059-91400 bp Feature: domain Description: INT_RitA_C_like Location: 91062-91383 bp Feature: domain Description: INT_RitA_C_like Location: 91 062-91 383 bp Feature: gene Location: 91397-91609 bp Feature: domain Description: INT_RitA_C_like Location: 91406-91601 bp Feature: domain Description: INT_RitA_C_like Location: 91 406-91 601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-GII, GIIM (pfam08388), INT_RitA_C_like (cd01188)

Seq: RPLU01000242.1 (1082 bp)
Overview 1 RT 1: 3-438 bp Neighborhood of RT #1 [3, 437] RVT-GII Feature: gene Location: 3-437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 219-438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 19-438 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RPLU01000023.1 (71293 bp)
Overview 1 RT 1: 68749-71291 bp Neighborhood of RT #1 [68749, 71290] HTH_ARSR AraJ RVT-GII Feature: gene Location: 68749-69120 bp Feature: domain Description: HTH_ARSR Location: 68806-69004 bp Feature: domain Description: HTH_ARSR Location: 68806-69004 bp Feature: gene Location: 69210-70394 bp Feature: domain Description: AraJ Location: 69213-70371 bp Feature: domain Description: AraJ Location: 69213 -703 71 bp Feature: gene Location: 70571-71290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70898-71291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70898-71291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), AraJ (COG2814), RVT-GII

Seq: RPLU01000173.1 (8861 bp)
Overview 1 RT 1: 896-4999 bp Neighborhood of RT #1 [896, 5034] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 Feature: gene Location: 896-1369 bp Feature: gene Location: 1387-2448 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1420-2080 bp Feature: domain Description: DDE_Tnp_IS66 Location: 14 20-2080 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2101-2218 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2101-2218 bp Feature: gene Location: 2502-3662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2619-3273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2619-3273 bp Feature: domain Description: GIIM Note: maturase Location: 3354-3570 bp Feature: domain Description: GIIM Note: maturase Location: 3354 -3570 bp Feature: gene Location: 3566-4213 bp Feature: gene Location: 4273-5034 bp Feature: domain Description: COG3436 Location: 4522-4999 bp Feature: domain Description: COG34 36 Location: 4 522-4 999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), COG3436 (Transposase )

Seq: RPLU01000192.1 (6580 bp)
Overview 1 RT 1: 4411-5942 bp Neighborhood of RT #1 [4411, 6307] RVT-GII RVT-GII Feature: gene Location: 4411-4650 bp Feature: gene Location: 4708-4896 bp Feature: gene Location: 4902-5732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5256-5634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 25 6-5 634 bp Feature: gene Location: 5729-6307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5735-5942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 735 -5 942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII