myRT

myRT report for GCA_004005475.1_ASM400547v1

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Seq: RZTZ01000009.1 (196325 bp)
Overview 1 RT 1: 121719-128408 bp Neighborhood of RT #1 [121719, 128408] LPD1 RVT-GII GIIM HNHc Feature: gene Location: 121719-122396 bp Feature: gene Location: 122740-123588 bp Feature: domain Description: LPD1 Location: 123373-123574 bp Feature: domain Description: LPD1 Location: 1 23373-1 23574 bp Feature: gene Location: 123846-125720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124146-124851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 241 46-1 24851 bp Feature: domain Description: GIIM Note: maturase Location: 124938-125142 bp Feature: domain Description: GIIM Note: maturase Location: 1 24938-1 251 42 bp Feature: domain Description: HNHc Note: nucleases Location: 125499-125646 bp Feature: domain Description: HNHc Note: nucleases Location: 1 25499-1 25646 bp Feature: gene Location: 126437-127240 bp Feature: gene Location: 127338-128408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LPD1 (pfam18796), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: RZTZ01000002.1 (894196 bp)
Overview 1 RT 1: 485082-491593 bp Neighborhood of RT #1 [485082, 491593] PinE RVT-UNC Feature: gene Location: 485082-485300 bp Feature: gene Location: 485434-485994 bp Feature: domain Description: PinE Location: 485437-485989 bp Feature: domain Description: PinE Location: 485437-485989 bp Feature: gene Location: 486216-489632 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 486678-487128 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 486678-48712 8 bp Feature: gene Location: 489888-490031 bp Feature: gene Location: 490643-491593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-UG25/RVT-GII/RVT-UG19/RVT-CRISPR(RVT-UNC)

Seq: RZTZ01000054.1 (1289 bp)
Overview 1 RT 1: 2-1197 bp Neighborhood of RT #1 [2, 1286] RVT-GII Feature: gene Location: 2-292 bp Feature: gene Location: 249-1286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 504-1197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 504-1197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RZTZ01000032.1 (15628 bp)
Overview 1 RT 1: 827-6339 bp Neighborhood of RT #1 [827, 6339] SUL1 PinE RVT-GII HNHc Feature: gene Location: 827-2287 bp Feature: domain Description: SUL1 Location: 833-2261 bp Feature: domain Description: SUL1 Location: 833-2261 bp Feature: gene Location: 2599-3003 bp Feature: domain Description: PinE Location: 2602-2995 bp Feature: domain Description: PinE Location: 2602-2995 bp Feature: gene Location: 3359-5131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3617-4316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3617-4 316 bp Feature: domain Description: HNHc Note: nucleases Location: 4868-5009 bp Feature: domain Description: HNHc Note: nucleases Location: 4 868-5009 bp Feature: gene Location: 5336-5521 bp Feature: gene Location: 6025-6339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SUL1 (COG0659), PinE (COG1961), RVT-GII, HNHc (smart00507)

Seq: RZTZ01000007.1 (207736 bp)
Overview 1 RT 1: 1-5021 bp Neighborhood of RT #1 [1, 5021] group_II_RT_mat RVT-GII GIIM RVT-GII Feature: gene Location: 1-207 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 7-205 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 7-205 bp Feature: gene Location: 362-1642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 602-1256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 602-125 6 bp Feature: domain Description: GIIM Note: maturase Location: 1337-1565 bp Feature: domain Description: GIIM Note: maturase Location: 1337-15 65 bp Feature: gene Location: 2123-2911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2378-2885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2378-2885 bp Feature: gene Location: 3587-3865 bp Feature: gene Location: 4668-5021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388)

Seq: RZTZ01000020.1 (69127 bp)
Overview 1 RT 1: 58007-61130 bp Neighborhood of RT #1 [58007, 61135] group_II_RT_mat RVT-GII RVT-GII BsYrkD-like_DUF156 Feature: gene Location: 58007-58534 bp Feature: gene Location: 59119-59601 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 59395-59599 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 59395-59599 bp Feature: gene Location: 59691-60002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59724-59946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59724-59946 bp Feature: gene Location: 60027-60284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60066-60213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 006 6 -6 0213 bp Feature: gene Location: 60460-60633 bp Feature: gene Location: 60875-61135 bp Feature: domain Description: BsYrkD-like_DUF156 Location: 60887-61130 bp Feature: domain Description: BsYrkD-like_DUF156 Location: 6 0887-6 1130 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, BsYrkD-like_DUF156 (cd10155)