myRT

myRT report for GCA_004005945.1_ASM400594v1

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Seq: SACS01000037.1 (22721 bp)
Overview 1 RT 1: 5740-9520 bp Neighborhood of RT #1 [5740, 9520] DUF3016 YegP RVT_N RVT-GII GIIM HNHc Feature: gene Location: 5740-6282 bp Feature: domain Description: DUF3016 Location: 5842-6253 bp Feature: domain Description: DUF301 6 Location: 5842-6253 bp Feature: gene Location: 6739-6894 bp Feature: domain Description: YegP Location: 6751-6862 bp Feature: domain Description: YegP Location: 6751 -6862 bp Feature: gene Location: 7017-8669 bp Feature: domain Description: RVT_N Location: 7074-7317 bp Feature: domain Description: RVT_N Location: 7074-731 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7362-8007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7362-8007 bp Feature: domain Description: GIIM Note: maturase Location: 8061-8292 bp Feature: domain Description: GIIM Note: maturase Location: 8061 -8292 bp Feature: domain Description: HNHc Note: nucleases Location: 8505-8664 bp Feature: domain Description: HNHc Note: nucleases Location: 8505-8664 bp Feature: gene Location: 8820-9188 bp Feature: gene Location: 9332-9520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3016 (pfam11454), YegP (COG3422), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: SACS01000011.1 (161979 bp)
Overview 1 RT 1: 119876-126083 bp Neighborhood of RT #1 [119876, 126085] AAA_21 AAA_21 RVT-Retrons DUF885 PRK05660 Feature: gene Location: 119876-120154 bp Feature: gene Location: 120171-121499 bp Feature: domain Description: AAA_21 Location: 120270-120567 bp Feature: domain Description: AAA_2 1 Location: 12 02 70-12 0567 bp Feature: domain Description: AAA_21 Location: 120741-120906 bp Feature: domain Description: AAA_2 1 Location: 12 0741-12 0906 bp Feature: gene Location: 121496-122467 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 121628-122195 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 162 8-12 2 195 bp Feature: gene Location: 122962-124812 bp Feature: domain Description: DUF885 Location: 123157-124780 bp Feature: domain Description: DUF885 Location: 12 3157-12 4780 bp Feature: gene Location: 124934-126085 bp Feature: domain Description: PRK05660 Location: 124937-126083 bp Feature: domain Description: PRK05660 Location: 12 4937-12 6083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-Retrons, DUF885 (pfam05960), PRK05660 (radical SAM family heme chaperone HemW)

Seq: SACS01000019.1 (93495 bp)
Overview 1 RT 1: 536-3721 bp Neighborhood of RT #1 [536, 3721] COG2859 RVT-GII GIIM Feature: gene Location: 536-1246 bp Feature: domain Description: COG2859 Location: 557-1244 bp Feature: domain Description: COG2859 Location: 557-1244 bp Feature: gene Location: 1459-1644 bp Feature: gene Location: 1824-3212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2154-2772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2154-2772 bp Feature: domain Description: GIIM Note: maturase Location: 2820-3039 bp Feature: domain Description: GIIM Note: maturase Location: 2820-3 03 9 bp Feature: gene Location: 3243-3410 bp Feature: gene Location: 3533-3721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2859 (Uncharacterized protein ), RVT-GII, GIIM (pfam08388)

Seq: SACS01000033.1 (28452 bp)
Overview 1 RT 1: 14885-26973 bp Neighborhood of RT #1 [14885, 27347] CoiA 15 RVT-UG8 YhhI YhhI YhhI RVT-UG3 DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 PIN_NicB-like Feature: gene Location: 14885-15979 bp Feature: domain Description: CoiA Location: 14978-15053 bp Feature: domain Description: CoiA Location: 14 978-15053 bp Feature: domain Description: 15 Location: 15368-15704 bp Feature: domain Description: 15 Location: 15368-15704 bp Feature: gene Location: 16189-16338 bp Feature: gene Location: 16429-18159 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 16699-17137 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 16699-17137 bp Feature: gene Location: 18225-19403 bp Feature: domain Description: YhhI Location: 18330-18624 bp Feature: domain Description: YhhI Location: 18330-18624 bp Feature: domain Description: YhhI Location: 18705-18930 bp Feature: domain Description: YhhI Location: 18705-18930 bp Feature: domain Description: YhhI Location: 19104-19314 bp Feature: domain Description: YhhI Location: 19104 -19314 bp Feature: gene Location: 19656-20951 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 19938-20508 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 19938-20508 bp Feature: gene Location: 21448-26214 bp Feature: domain Description: DUF4011 Location: 21490-22039 bp Feature: domain Description: DUF4 011 Location: 214 90-22039 bp Feature: domain Description: DEXXQc_SF1 Location: 22357-22738 bp Feature: domain Description: DEXXQc_SF1 Location: 22357-22738 bp Feature: domain Description: DEXXQc_SF1 Location: 23689-24535 bp Feature: domain Description: DEXXQc_SF1 Location: 23689-24 535 bp Feature: domain Description: TIGR00376 Location: 24886-25066 bp Feature: domain Description: TIGR00376 Location: 24 886-25066 bp Feature: domain Description: MTES_1575 Location: 25213-25483 bp Feature: domain Description: MTES_1575 Location: 25213-254 83 bp Feature: domain Description: DUF3320 Location: 25702-25843 bp Feature: domain Description: DUF3320 Location: 25702-2584 3 bp Feature: gene Location: 26436-27347 bp Feature: domain Description: PIN_NicB-like Location: 26442-26973 bp Feature: domain Description: PIN_NicB-like Location: 264 4 2-26973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CoiA (pfam06054), 15 (PHA02556), RVT-UG8, YhhI (COG5433), RVT-UG3, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784)
PIN_NicB-like (cd18722)