myRT

myRT report for GCA_004009875.1_G25-42

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Seq: LDER01000167.1 (141529 bp)
Overview 1 RT 1: 60-4583 bp Neighborhood of RT #1 [60, 4583] SpaA SpaA RVT-GII HNHc TQXA_dom Feature: gene Location: 60-1013 bp Feature: domain Description: SpaA Location: 519-705 bp Feature: domain Description: SpaA Location: 51 9-705 bp Feature: domain Description: SpaA Location: 783-981 bp Feature: domain Description: SpaA Location: 783-981 bp Feature: gene Location: 1178-3043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1499-2225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 499-2225 bp Feature: domain Description: HNHc Note: nucleases Location: 2777-2915 bp Feature: domain Description: HNHc Note: nucleases Location: 2777-291 5 bp Feature: gene Location: 3769-4152 bp Feature: domain Description: TQXA_dom Location: 4051-4135 bp Feature: domain Description: TQXA_dom Location: 4051 -41 35 bp Feature: gene Location: 4407-4583 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpaA (pfam17802), RVT-GII, HNHc (smart00507), TQXA_dom (TIGR03934)

Seq: LDER01000291.1 (70974 bp)
Overview 1 RT 1: 65412-70747 bp Neighborhood of RT #1 [65412, 70866] polC RVT-GII HNHc Feature: gene Location: 65412-68324 bp Feature: domain Description: polC Location: 65430-68307 bp Feature: domain Description: polC Location: 65430-68307 bp Feature: gene Location: 68612-68875 bp Feature: gene Location: 69040-70866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69346-70042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69346-70042 bp Feature: domain Description: HNHc Note: nucleases Location: 70588-70747 bp Feature: domain Description: HNHc Note: nucleases Location: 70588-70747 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT polC (TIGR00354), RVT-GII, HNHc (smart00507)

Seq: LDER01000311.1 (66621 bp)
Overview 1 RT 1: 61746-66316 bp Neighborhood of RT #1 [61746, 66316] PRK00092 polC RVT-GII HNHc Feature: gene Location: 61746-62216 bp Feature: domain Description: PRK00092 Location: 61752-62214 bp Feature: domain Description: PRK00092 Location: 61752-62214 bp Feature: gene Location: 62549-64000 bp Feature: domain Description: polC Location: 62594-63998 bp Feature: domain Description: polC Location: 62594-63 998 bp Feature: gene Location: 64062-65888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64368-65064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 643 68-65064 bp Feature: domain Description: HNHc Note: nucleases Location: 65610-65769 bp Feature: domain Description: HNHc Note: nucleases Location: 65610-65769 bp Feature: gene Location: 66053-66316 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00092 (ribosome maturation protein RimP; Reviewed), polC (TIGR00354), RVT-GII, HNHc (smart00507)

Seq: LDER01000361.1 (18964 bp)
Overview 1 RT 1: 3-3356 bp Neighborhood of RT #1 [3, 3394] Rve RVT_N RVT-GII PDDEXK_2 DUF2187 Feature: gene Location: 3-596 bp Feature: domain Description: Rve Location: 6-597 bp Feature: domain Description: Rve Location: 6-597 bp Feature: gene Location: 918-2369 bp Feature: domain Description: RVT_N Location: 1299-1542 bp Feature: domain Description: RVT_N Location: 1299-154 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1599-2268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1599-2268 bp Feature: gene Location: 2616-2981 bp Feature: domain Description: PDDEXK_2 Location: 2739-2970 bp Feature: domain Description: PDDEXK_2 Location: 2739-2970 bp Feature: gene Location: 3170-3394 bp Feature: domain Description: DUF2187 Location: 3191-3356 bp Feature: domain Description: DUF2187 Location: 3191-3356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT_N (pfam13655), RVT-GII, PDDEXK_2 (pfam12784), DUF2187 (pfam09953)

Seq: LDER01000227.1 (28450 bp)
Overview 1 RT 1: 306-4774 bp Neighborhood of RT #1 [306, 4791] RVT-GII HNHc Na_Pro_sym YjdB Feature: gene Location: 306-569 bp Feature: gene Location: 734-2560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1040-1736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1040-1736 bp Feature: domain Description: HNHc Note: nucleases Location: 2282-2441 bp Feature: domain Description: HNHc Note: nucleases Location: 2282-2441 bp Feature: gene Location: 2650-4122 bp Feature: domain Description: Na_Pro_sym Location: 2668-4105 bp Feature: domain Description: Na_Pro_sym Location: 2668-4105 bp Feature: gene Location: 4393-4791 bp Feature: domain Description: YjdB Location: 4504-4774 bp Feature: domain Description: YjdB Location: 45 04-4774 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), Na_Pro_sym (TIGR02121), YjdB (COG5492)

Seq: LDER01000231.1 (34830 bp)
Overview 1 RT 1: 5740-10229 bp Neighborhood of RT #1 [5740, 10229] TctC RVT-UG2 Feature: gene Location: 5740-6561 bp Feature: domain Description: TctC Location: 5782-6544 bp Feature: domain Description: TctC Location: 5782-6 544 bp Feature: gene Location: 6880-7038 bp Feature: gene Location: 7553-8965 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 7829-8666 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 7829-86 6 6 bp Feature: gene Location: 9086-9280 bp Feature: gene Location: 9705-10229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TctC (pfam03401), RVT-UG2