myRT

myRT report for GCA_004010015.1_ASM401001v1

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Seq: RRWU01000001.1 (1954361 bp)
Overview 1 RT 1: 20470-25758 bp 2 RT 2: 146556-152611 bp 3 RT 3: 161920-167452 bp 4 RT 4: 448638-456130 bp 5 RT 5: 946837-953169 bp 6 RT 6: 1107486-1113551 bp 7 RT 7: 1468059-1472874 bp 8 RT 8: 1550922-1566320 bp 9 RT 9: 1600881-1606724 bp 10 RT 10: 1786272-1790451 bp Neighborhood of RT #1 [20470, 25758] PRK13805 RVT-GII GIIM Neighborhood of RT #2 [146556, 152622] PRK08939 thrS RVT-GII GIIM LytT DUF3021 Neighborhood of RT #3 [161920, 167454] OmpR HK_WalK HK_WalK RVT-GII GIIM PRK02463 AcyP Neighborhood of RT #4 [448638, 456147] dTDP_sugar_isom RmlD_sub_bind RVT-AbiA HEPN_AbiA_CTD SIR2-like PTS_IIB_chitobiose_lichenan Neighborhood of RT #5 [946837, 953195] wecB RVT-GII GIIM COG3464 CelB Neighborhood of RT #6 [1107486, 1113556] PRK00865 DUF2507 RVT-GII GIIM thioredoxin PRK00409 Neighborhood of RT #7 [1468059, 1472918] PTS_EIIA_2 Nuc_deoxyrib_tr RVT-GII GIIM zinc_ribbon_2 DUF4767 ManX Neighborhood of RT #8 [1550922, 1566328] LysR 2A0307_GadC RVT-GII GIIM MucBP_2 Mub_B2 MucBP_2 Mub_B2 Mub_B2 Mub_B2 MucBP_2 Mub_B2 MucBP_2 Mub_B2 MucBP_2 Mub_B2 MucBP_2 Mub_B2 MucBP_2 Mub_B2 MucBP_2 Mub_B2 Mub_B2 MucBP_2 Gram_pos_anchor Neighborhood of RT #9 [1600881, 1606724] PotE RVT-GII GIIM Neighborhood of RT #10 [1786272, 1790459] AcrR RVT-GII GIIM SsuE SsuE Feature: gene Location: 20470-22503 bp Feature: domain Description: PRK13805 Location: 20473-22480 bp Feature: domain Description: PRK1 3805 Location: 20473-22480 bp Feature: gene Location: 22533-22700 bp Feature: gene Location: 23142-24437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23343-23961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23343-23961 bp Feature: domain Description: GIIM Note: maturase Location: 24015-24225 bp Feature: domain Description: GIIM Note: maturase Location: 2401 5-24225 bp Feature: gene Location: 24634-25059 bp Feature: gene Location: 25219-25758 bp Feature: gene Location: 146556-147455 bp Feature: domain Description: PRK08939 Location: 146559-147453 bp Feature: domain Description: PRK08939 Location: 1 46559-1 47453 bp Feature: gene Location: 147737-149668 bp Feature: domain Description: thrS Location: 147749-149657 bp Feature: domain Description: thrS Location: 1 47749-1 49657 bp Feature: gene Location: 150283-151578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150484-151102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 50484-1 51 1 02 bp Feature: domain Description: GIIM Note: maturase Location: 151156-151366 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 1 56-1 51 366 bp Feature: gene Location: 151766-152200 bp Feature: domain Description: LytT Location: 151835-152198 bp Feature: domain Description: LytT Location: 1 51 835-1 521 98 bp Feature: gene Location: 152197-152622 bp Feature: domain Description: DUF3021 Location: 152215-152611 bp Feature: domain Description: DUF3021 Location: 1 5221 5-1 5261 1 bp Feature: gene Location: 161920-162648 bp Feature: domain Description: OmpR Location: 161929-162616 bp Feature: domain Description: OmpR Location: 1 61 929-1 6261 6 bp Feature: gene Location: 162632-164152 bp Feature: domain Description: HK_WalK Location: 163094-163457 bp Feature: domain Description: HK_WalK Location: 1 63094-1 63457 bp Feature: domain Description: HK_WalK Location: 163457-164126 bp Feature: domain Description: HK_WalK Location: 1 63457-1 641 26 bp Feature: gene Location: 164753-166048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164954-165572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 64954-1 65572 bp Feature: domain Description: GIIM Note: maturase Location: 165626-165836 bp Feature: domain Description: GIIM Note: maturase Location: 1 65626-1 65836 bp Feature: gene Location: 166132-167115 bp Feature: domain Description: PRK02463 Location: 166135-167092 bp Feature: domain Description: PRK02463 Location: 1 661 35-1 67092 bp Feature: gene Location: 167179-167454 bp Feature: domain Description: AcyP Location: 167182-167452 bp Feature: domain Description: AcyP Location: 1 671 82-1 67452 bp Feature: gene Location: 448638-449246 bp Feature: domain Description: dTDP_sugar_isom Location: 448677-449232 bp Feature: domain Description: dTDP_sugar_isom Location: 448677-449232 bp Feature: gene Location: 449263-450249 bp Feature: domain Description: RmlD_sub_bind Location: 449266-450214 bp Feature: domain Description: RmlD_sub_bind Location: 449266-45021 4 bp Feature: gene Location: 450447-452372 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 450831-451341 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 450831 -451 341 bp Feature: domain Description: HEPN_AbiA_CTD Location: 451980-452352 bp Feature: domain Description: HEPN_AbiA_CTD Location: 451 980-452352 bp Feature: gene Location: 452814-455630 bp Feature: domain Description: SIR2-like Location: 452892-453477 bp Feature: domain Description: SIR2-like Location: 452892-453477 bp Feature: gene Location: 455926-456147 bp Feature: domain Description: PTS_IIB_chitobiose_lichenan Location: 455938-456130 bp Feature: domain Description: PTS_IIB_chitobiose_lichenan Location: 455938-4561 30 bp Feature: gene Location: 946837-947979 bp Feature: domain Description: wecB Location: 946849-947938 bp Feature: domain Description: wecB Location: 946849-947938 bp Feature: gene Location: 948093-948278 bp Feature: gene Location: 948368-949663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948569-949187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948569-9491 87 bp Feature: domain Description: GIIM Note: maturase Location: 949241-949451 bp Feature: domain Description: GIIM Note: maturase Location: 949241 -949451 bp Feature: gene Location: 950389-951666 bp Feature: domain Description: COG3464 Location: 950428-951613 bp Feature: domain Description: COG3464 Location: 950428-951 61 3 bp Feature: gene Location: 951864-953195 bp Feature: domain Description: CelB Location: 951867-953169 bp Feature: domain Description: CelB Location: 951 867-9531 69 bp Feature: gene Location: 1107486-1108286 bp Feature: domain Description: PRK00865 Location: 1107492-1108245 bp Feature: domain Description: PRK00865 Location: 1 1 07492-1 1 08245 bp Feature: gene Location: 1108383-1108778 bp Feature: domain Description: DUF2507 Location: 1108410-1108770 bp Feature: domain Description: DUF2507 Location: 1 1 0841 0-1 1 08770 bp Feature: gene Location: 1108891-1110186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1109092-1109710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 09092-1 1 0971 0 bp Feature: domain Description: GIIM Note: maturase Location: 1109764-1109974 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 09764-1 1 09974 bp Feature: gene Location: 1110800-1111111 bp Feature: domain Description: thioredoxin Location: 1110818-1111100 bp Feature: domain Description: thioredoxin Location: 1 1 1 081 8-1 1 1 1 1 00 bp Feature: gene Location: 1111190-1113556 bp Feature: domain Description: PRK00409 Location: 1111193-1113551 bp Feature: domain Description: PRK00409 Location: 1 1 1 1 1 93-1 1 1 3551 bp Feature: gene Location: 1468059-1468619 bp Feature: domain Description: PTS_EIIA_2 Location: 1468143-1468599 bp Feature: domain Description: PTS_EIIA_2 Location: 1 4681 43-1 468599 bp Feature: gene Location: 1468706-1469182 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1468727-1469057 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1 468727-1 469057 bp Feature: gene Location: 1469270-1470565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1469471-1470089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 469471 -1 470089 bp Feature: domain Description: GIIM Note: maturase Location: 1470143-1470353 bp Feature: domain Description: GIIM Note: maturase Location: 1 4701 43-1 470353 bp Feature: gene Location: 1471168-1472364 bp Feature: domain Description: zinc_ribbon_2 Location: 1471180-1471246 bp Feature: domain Description: zinc_ribbon_2 Location: 1 471 1 80-1 471 246 bp Feature: domain Description: DUF4767 Location: 1471912-1472353 bp Feature: domain Description: DUF4767 Location: 1 471 91 2-1 472353 bp Feature: gene Location: 1472520-1472918 bp Feature: domain Description: ManX Location: 1472532-1472874 bp Feature: domain Description: ManX Location: 1 472532-1 472874 bp Feature: gene Location: 1550922-1551848 bp Feature: domain Description: LysR Location: 1550964-1551819 bp Feature: domain Description: LysR Location: 1 550964-1 551 81 9 bp Feature: gene Location: 1552001-1553512 bp Feature: domain Description: 2A0307_GadC Location: 1552103-1553480 bp Feature: domain Description: 2A0307_GadC Location: 1 5521 03-1 553480 bp Feature: gene Location: 1553622-1554917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1553823-1554441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 553823-1 554441 bp Feature: domain Description: GIIM Note: maturase Location: 1554495-1554705 bp Feature: domain Description: GIIM Note: maturase Location: 1 554495-1 554705 bp Feature: gene Location: 1555521-1558472 bp Feature: domain Description: MucBP_2 Location: 1555560-1555782 bp Feature: domain Description: MucBP_2 Location: 1 555560-1 555782 bp Feature: domain Description: Mub_B2 Location: 1555854-1556043 bp Feature: domain Description: Mub_B2 Location: 1 555854-1 556043 bp Feature: domain Description: MucBP_2 Location: 1556139-1556373 bp Feature: domain Description: MucBP_2 Location: 1 5561 39-1 556373 bp Feature: domain Description: Mub_B2 Location: 1556445-1556640 bp Feature: domain Description: Mub_B2 Location: 1 556445-1 556640 bp Feature: domain Description: Mub_B2 Location: 1556979-1557186 bp Feature: domain Description: Mub_B2 Location: 1 556979-1 5571 86 bp Feature: domain Description: Mub_B2 Location: 1557522-1557726 bp Feature: domain Description: Mub_B2 Location: 1 557522-1 557726 bp Feature: domain Description: MucBP_2 Location: 1558107-1558338 bp Feature: domain Description: MucBP_2 Location: 1 5581 07-1 558338 bp Feature: gene Location: 1558631-1566328 bp Feature: domain Description: Mub_B2 Location: 1560914-1561202 bp Feature: domain Description: Mub_B2 Location: 1 56091 4-1 561 202 bp Feature: domain Description: MucBP_2 Location: 1561400-1561667 bp Feature: domain Description: MucBP_2 Location: 1 561 400-1 561 667 bp Feature: domain Description: Mub_B2 Location: 1561733-1561952 bp Feature: domain Description: Mub_B2 Location: 1 561 733-1 561 952 bp Feature: domain Description: MucBP_2 Location: 1562267-1562483 bp Feature: domain Description: MucBP_2 Location: 1 562267-1 562483 bp Feature: domain Description: Mub_B2 Location: 1562600-1562828 bp Feature: domain Description: Mub_B2 Location: 1 562600-1 562828 bp Feature: domain Description: MucBP_2 Location: 1562978-1563185 bp Feature: domain Description: MucBP_2 Location: 1 562978-1 5631 85 bp Feature: domain Description: Mub_B2 Location: 1563302-1563524 bp Feature: domain Description: Mub_B2 Location: 1 563302-1 563524 bp Feature: domain Description: MucBP_2 Location: 1563677-1563830 bp Feature: domain Description: MucBP_2 Location: 1 563677-1 563830 bp Feature: domain Description: Mub_B2 Location: 1564007-1564205 bp Feature: domain Description: Mub_B2 Location: 1 564007-1 564205 bp Feature: domain Description: MucBP_2 Location: 1564493-1564718 bp Feature: domain Description: MucBP_2 Location: 1 564493-1 56471 8 bp Feature: domain Description: Mub_B2 Location: 1564832-1565030 bp Feature: domain Description: Mub_B2 Location: 1 564832-1 565030 bp Feature: domain Description: Mub_B2 Location: 1565336-1565495 bp Feature: domain Description: Mub_B2 Location: 1 565336-1 565495 bp Feature: domain Description: MucBP_2 Location: 1565792-1566026 bp Feature: domain Description: MucBP_2 Location: 1 565792-1 566026 bp Feature: domain Description: Gram_pos_anchor Location: 1566194-1566320 bp Feature: domain Description: Gram_pos_anchor Location: 1 5661 94-1 566320 bp Feature: gene Location: 1600881-1601012 bp Feature: gene Location: 1601081-1602433 bp Feature: domain Description: PotE Location: 1601087-1602383 bp Feature: domain Description: PotE Location: 1 601 087-1 602383 bp Feature: gene Location: 1602525-1603820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1602726-1603344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 602726-1 603344 bp Feature: domain Description: GIIM Note: maturase Location: 1603398-1603608 bp Feature: domain Description: GIIM Note: maturase Location: 1 603398-1 603608 bp Feature: gene Location: 1604262-1604483 bp Feature: gene Location: 1604706-1606724 bp Feature: gene Location: 1786272-1786514 bp Feature: gene Location: 1786660-1787283 bp Feature: domain Description: AcrR Location: 1786678-1787023 bp Feature: domain Description: AcrR Location: 1 786678-1 787023 bp Feature: gene Location: 1787892-1789187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1788093-1788711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 788093-1 78871 1 bp Feature: domain Description: GIIM Note: maturase Location: 1788765-1788975 bp Feature: domain Description: GIIM Note: maturase Location: 1 788765-1 788975 bp Feature: gene Location: 1789356-1789892 bp Feature: domain Description: SsuE Location: 1789359-1789875 bp Feature: domain Description: SsuE Location: 1 789359-1 789875 bp Feature: gene Location: 1789905-1790459 bp Feature: domain Description: SsuE Location: 1789908-1790451 bp Feature: domain Description: SsuE Location: 1 789908-1 790451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13805 (bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional), RVT-GII, GIIM (pfam08388), PRK08939 (primosomal protein DnaI; Reviewed), thrS (TIGR00418), LytT (COG3279), DUF3021 (pfam11457), OmpR (COG0745), HK_WalK (NF033092), PRK02463 (OxaA-like protein precursor; Provisional)
AcyP (COG1254), dTDP_sugar_isom (pfam00908), RmlD_sub_bind (pfam04321), RVT-AbiA, HEPN_AbiA_CTD (pfam18732), SIR2-like (cd01406), PTS_IIB_chitobiose_lichenan (cd05564), wecB (TIGR00236), COG3464 (Transposase ), CelB (COG1455)
PRK00865 (glutamate racemase; Provisional), DUF2507 (pfam10702), thioredoxin (TIGR01068), PRK00409 (recombination and DNA strand exchange inhibitor protein; Reviewed), PTS_EIIA_2 (pfam00359), Nuc_deoxyrib_tr (pfam05014), zinc_ribbon_2 (pfam13240), DUF4767 (pfam15983), ManX (COG2893), LysR (COG0583)
2A0307_GadC (TIGR00910), MucBP_2 (pfam17965), Mub_B2 (pfam17966), Gram_pos_anchor (pfam00746), PotE (COG0531), AcrR (COG1309), SsuE (COG0431)