myRT

myRT report for GCA_004010255.1_ASM401025v1

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Seq: RYZS01000002.1 (1154929 bp)
Overview 1 RT 1: 3072-6313 bp 2 RT 2: 55936-61024 bp 3 RT 3: 297086-302781 bp 4 RT 4: 494755-499385 bp 5 RT 5: 1148236-1153746 bp Neighborhood of RT #1 [3072, 6313] Usp GIIM RVT-GII RVT-GII Neighborhood of RT #2 [55936, 61821] DEDD_Tnp_IS110 Transposase_20 RVT-GII GIIM Voltage_gated_ClC RepA_N Neighborhood of RT #3 [297086, 302888] TIGR00276 RAYT RVT-GII GIIM CelB RarA Neighborhood of RT #4 [494755, 499414] PRK11907 Gram_pos_anchor Endonuclea_NS_2 RVT-GII HNHc Endonuclea_NS_2 Neighborhood of RT #5 [1148236, 1153751] G3P_antiterm MFS RVT-GII GIIM Putative_PNPOx LCB5 Feature: gene Location: 3072-3497 bp Feature: domain Description: Usp Location: 3087-3495 bp Feature: domain Description: Usp Location: 3087-3495 bp Feature: gene Location: 3842-4153 bp Feature: domain Description: GIIM Note: maturase Location: 3848-3977 bp Feature: domain Description: GIIM Note: maturase Location: 3848-3977 bp Feature: gene Location: 4153-4572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4198-4432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 98-4432 bp Feature: gene Location: 4508-4921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4523-4910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4523-491 0 bp Feature: gene Location: 4935-5228 bp Feature: gene Location: 6020-6313 bp Feature: gene Location: 55936-56727 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 55948-56422 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 55948-56422 bp Feature: gene Location: 56727-57122 bp Feature: domain Description: Transposase_20 Location: 56748-57003 bp Feature: domain Description: Transposase_20 Location: 56748-57003 bp Feature: gene Location: 57283-58671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57604-58219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57604-5821 9 bp Feature: domain Description: GIIM Note: maturase Location: 58276-58492 bp Feature: domain Description: GIIM Note: maturase Location: 58276-58492 bp Feature: gene Location: 59158-60678 bp Feature: domain Description: Voltage_gated_ClC Location: 59206-60334 bp Feature: domain Description: Voltage_gated_ClC Location: 59206-60334 bp Feature: gene Location: 60736-61821 bp Feature: domain Description: RepA_N Location: 60790-61024 bp Feature: domain Description: RepA_N Location: 60790-61 024 bp Feature: gene Location: 297086-298228 bp Feature: domain Description: TIGR00276 Location: 297110-298115 bp Feature: domain Description: TIGR00276 Location: 2971 1 0-2981 1 5 bp Feature: gene Location: 298407-298880 bp Feature: domain Description: RAYT Location: 298425-298809 bp Feature: domain Description: RAYT Location: 298425-298809 bp Feature: gene Location: 299447-300832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299768-300380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299768-300380 bp Feature: domain Description: GIIM Note: maturase Location: 300437-300653 bp Feature: domain Description: GIIM Note: maturase Location: 300437-300653 bp Feature: gene Location: 300958-302259 bp Feature: domain Description: CelB Location: 300973-302236 bp Feature: domain Description: CelB Location: 300973-302236 bp Feature: gene Location: 302271-302888 bp Feature: domain Description: RarA Location: 302343-302781 bp Feature: domain Description: RarA Location: 302343-302781 bp Feature: gene Location: 494755-495852 bp Feature: domain Description: PRK11907 Location: 494863-495103 bp Feature: domain Description: PRK1 1 907 Location: 494863-4951 03 bp Feature: domain Description: Gram_pos_anchor Location: 495736-495850 bp Feature: domain Description: Gram_pos_anchor Location: 495736-495850 bp Feature: gene Location: 495855-496349 bp Feature: domain Description: Endonuclea_NS_2 Location: 495858-496053 bp Feature: domain Description: Endonuclea_NS_2 Location: 495858-496053 bp Feature: gene Location: 496466-498241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496727-497429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496727-497429 bp Feature: domain Description: HNHc Note: nucleases Location: 497990-498128 bp Feature: domain Description: HNHc Note: nucleases Location: 497990-4981 28 bp Feature: gene Location: 498580-498774 bp Feature: gene Location: 498956-499414 bp Feature: domain Description: Endonuclea_NS_2 Location: 499187-499385 bp Feature: domain Description: Endonuclea_NS_2 Location: 4991 87-499385 bp Feature: gene Location: 1148236-1148808 bp Feature: domain Description: G3P_antiterm Location: 1148287-1148800 bp Feature: domain Description: G3P_antiterm Location: 1 1 48287-1 1 48800 bp Feature: gene Location: 1149233-1150492 bp Feature: domain Description: MFS Location: 1149326-1150427 bp Feature: domain Description: MFS Location: 1 1 49326-1 1 50427 bp Feature: gene Location: 1150567-1151955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1150888-1151503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 50888-1 1 51 503 bp Feature: domain Description: GIIM Note: maturase Location: 1151560-1151776 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 51 560-1 1 51 776 bp Feature: gene Location: 1152436-1152843 bp Feature: domain Description: Putative_PNPOx Location: 1152439-1152676 bp Feature: domain Description: Putative_PNPOx Location: 1 1 52439-1 1 52676 bp Feature: gene Location: 1152864-1153751 bp Feature: domain Description: LCB5 Location: 1152867-1153746 bp Feature: domain Description: LCB5 Location: 1 1 52867-1 1 53746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Usp (pfam00582), GIIM (pfam08388), RVT-GII, DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), Voltage_gated_ClC (cl02915), RepA_N (pfam06970), TIGR00276 (epoxyqueuosine reductase), RAYT (COG1943), CelB (COG1455)
RarA (COG2256), PRK11907 (bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase), Gram_pos_anchor (pfam00746), Endonuclea_NS_2 (pfam13930), HNHc (smart00507), G3P_antiterm (pfam04309), MFS (cl28910), Putative_PNPOx (pfam01243), LCB5 (COG1597)

Seq: CM013039.1 (40937 bp)
Overview 1 RT 1: 12809-17589 bp Neighborhood of RT #1 [12809, 17618] Tra8 RVT-AbiP2 HsdM Rve Feature: gene Location: 12809-12970 bp Feature: gene Location: 13053-14006 bp Feature: domain Description: Tra8 Location: 13056-13983 bp Feature: domain Description: Tra8 Location: 13056-13983 bp Feature: gene Location: 13984-15459 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 14332-14797 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 14332 -14797 bp Feature: gene Location: 15797-17275 bp Feature: domain Description: HsdM Location: 15818-17243 bp Feature: domain Description: HsdM Location: 15818-172 43 bp Feature: gene Location: 17298-17618 bp Feature: domain Description: Rve Location: 17304-17589 bp Feature: domain Description: Rve Location: 17304-17589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-AbiP2, HsdM (COG0286), Rve (COG3316)

Seq: CM013040.1 (52705 bp)
Overview 1 RT 1: 16395-21562 bp Neighborhood of RT #1 [16395, 22251] CwlT_like Spr RVT-GII HNHc VirB4 Feature: gene Location: 16395-17531 bp Feature: domain Description: CwlT_like Location: 16641-17118 bp Feature: domain Description: CwlT_like Location: 16641-17118 bp Feature: domain Description: Spr Location: 17142-17502 bp Feature: domain Description: Spr Location: 17142-17502 bp Feature: gene Location: 17553-17864 bp Feature: gene Location: 18061-19938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18376-19114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183 76-19114 bp Feature: domain Description: HNHc Note: nucleases Location: 19672-19825 bp Feature: domain Description: HNHc Note: nucleases Location: 19672-19825 bp Feature: gene Location: 20125-20358 bp Feature: gene Location: 20626-22251 bp Feature: domain Description: VirB4 Location: 20950-21562 bp Feature: domain Description: VirB4 Location: 20950-21562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CwlT_like, Spr (COG0791), RVT-GII, HNHc (smart00507), VirB4 (COG3451)

Seq: RYZS01000001.1 (3518722 bp)
Overview 1 RT 1: 414898-419261 bp 2 RT 2: 541706-547039 bp 3 RT 3: 1255434-1261136 bp 4 RT 4: 2090991-2099019 bp 5 RT 5: 2703460-2708219 bp 6 RT 6: 3080150-3087956 bp Neighborhood of RT #1 [414898, 419281] CeuD CeuA RVT-GII GIIM group_II_RT_mat Crp Neighborhood of RT #2 [541706, 547047] HTH_GlnR-like PRK05567 RVT-GII GIIM RVT-GII PRK05431 Neighborhood of RT #3 [1255434, 1261136] Sortase_A PRK08581 Peptidase_M23 RVT-GII HNHc Neighborhood of RT #4 [2090991, 2099048] peptidase-T LPG_synthase_TM RVT-GII GIIM AL_MDR chaperone_ClpB Neighborhood of RT #5 [2703460, 2708219] RVT-GII Intron_maturas2 HNHc FtsK Neighborhood of RT #6 [3080150, 3087976] PspF LevR DHAK_reg RVT-GII GIIM PRK07726 DUF1033 Feature: gene Location: 414898-415656 bp Feature: domain Description: CeuD Location: 414901-415651 bp Feature: domain Description: CeuD Location: 4 14 901-4 15651 bp Feature: gene Location: 415719-416684 bp Feature: domain Description: CeuA Location: 415752-416682 bp Feature: domain Description: CeuA Location: 4 15752-4 16682 bp Feature: gene Location: 416759-417628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416762-417176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 16762-4 17176 bp Feature: domain Description: GIIM Note: maturase Location: 417233-417449 bp Feature: domain Description: GIIM Note: maturase Location: 4 17233-4 174 4 9 bp Feature: gene Location: 417667-418146 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 417820-418030 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4 17820-4 18030 bp Feature: gene Location: 418622-419281 bp Feature: domain Description: Crp Location: 418724-419261 bp Feature: domain Description: Crp Location: 4 18724 -4 19261 bp Feature: gene Location: 541706-542176 bp Feature: domain Description: HTH_GlnR-like Location: 541757-541991 bp Feature: domain Description: HTH_GlnR-like Location: 54 1757-54 1991 bp Feature: gene Location: 542284-543768 bp Feature: domain Description: PRK05567 Location: 542302-543760 bp Feature: domain Description: PRK05567 Location: 54 2302-54 3760 bp Feature: gene Location: 543871-544602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 543916-544150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54 3916-54 4 150 bp Feature: domain Description: GIIM Note: maturase Location: 544207-544423 bp Feature: domain Description: GIIM Note: maturase Location: 54 4 207-54 4 4 23 bp Feature: gene Location: 544538-544951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 544553-544940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54 4 553-54 4 94 0 bp Feature: gene Location: 544965-545258 bp Feature: gene Location: 545767-547047 bp Feature: domain Description: PRK05431 Location: 545770-547039 bp Feature: domain Description: PRK054 31 Location: 54 5770-54 7039 bp Feature: gene Location: 1255434-1256396 bp Feature: domain Description: Sortase_A Location: 1255707-1256085 bp Feature: domain Description: Sortase_A Location: 1255707-1256085 bp Feature: gene Location: 1256542-1257879 bp Feature: domain Description: PRK08581 Location: 1256641-1257508 bp Feature: domain Description: PRK08581 Location: 125664 1-1257508 bp Feature: domain Description: Peptidase_M23 Location: 1257601-1257853 bp Feature: domain Description: Peptidase_M23 Location: 1257601-1257853 bp Feature: gene Location: 1258557-1260350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1258851-1259547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1258851-125954 7 bp Feature: domain Description: HNHc Note: nucleases Location: 1260096-1260237 bp Feature: domain Description: HNHc Note: nucleases Location: 1260096-1260237 bp Feature: gene Location: 1260372-1260575 bp Feature: gene Location: 1260585-1261136 bp Feature: gene Location: 2090991-2092220 bp Feature: domain Description: peptidase-T Location: 2090997-2092215 bp Feature: domain Description: peptidase-T Location: 2090997-2092215 bp Feature: gene Location: 2092323-2093357 bp Feature: domain Description: LPG_synthase_TM Location: 2092362-2093280 bp Feature: domain Description: LPG_synthase_TM Location: 2092362-2093280 bp Feature: gene Location: 2093813-2095201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2094134-2094749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2094 134 -2094 74 9 bp Feature: domain Description: GIIM Note: maturase Location: 2094806-2095022 bp Feature: domain Description: GIIM Note: maturase Location: 2094 806-2095022 bp Feature: gene Location: 2095277-2096287 bp Feature: domain Description: AL_MDR Location: 2095289-2096279 bp Feature: domain Description: AL_MDR Location: 2095289-2096279 bp Feature: gene Location: 2096439-2099048 bp Feature: domain Description: chaperone_ClpB Location: 2096463-2099019 bp Feature: domain Description: chaperone_ClpB Location: 20964 63-2099019 bp Feature: gene Location: 2703460-2703771 bp Feature: gene Location: 2703799-2703969 bp Feature: gene Location: 2704221-2706029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2704485-2705310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2704 4 85-2705310 bp Feature: domain Description: Intron_maturas2 Location: 2705385-2705679 bp Feature: domain Description: Intron_maturas2 Location: 2705385-2705679 bp Feature: domain Description: HNHc Note: nucleases Location: 2705844-2706000 bp Feature: domain Description: HNHc Note: nucleases Location: 270584 4 -2706000 bp Feature: gene Location: 2706605-2707822 bp Feature: domain Description: FtsK Location: 2707250-2707748 bp Feature: domain Description: FtsK Location: 2707250-270774 8 bp Feature: gene Location: 2707971-2708219 bp Feature: gene Location: 3080150-3082828 bp Feature: domain Description: PspF Location: 3080180-3081386 bp Feature: domain Description: PspF Location: 3080180-3081386 bp Feature: domain Description: LevR Location: 3081431-3082796 bp Feature: domain Description: LevR Location: 30814 31-3082796 bp Feature: gene Location: 3082921-3083415 bp Feature: domain Description: DHAK_reg Location: 3082945-3083290 bp Feature: domain Description: DHAK_reg Location: 308294 5-3083290 bp Feature: gene Location: 3083723-3085111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3084044-3084659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3084 04 4 -3084 659 bp Feature: domain Description: GIIM Note: maturase Location: 3084716-3084932 bp Feature: domain Description: GIIM Note: maturase Location: 3084 716-3084 932 bp Feature: gene Location: 3085591-3087666 bp Feature: domain Description: PRK07726 Location: 3085597-3087460 bp Feature: domain Description: PRK07726 Location: 3085597-30874 60 bp Feature: gene Location: 3087605-3087976 bp Feature: domain Description: DUF1033 Location: 3087608-3087956 bp Feature: domain Description: DUF1033 Location: 3087608-3087956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CeuD (COG4604), CeuA (COG4607), RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416), Crp (pfam00325), HTH_GlnR-like (cd01105), PRK05567 (inosine 5'-monophosphate dehydrogenase; Reviewed), PRK05431 (seryl-tRNA synthetase; Provisional), Sortase_A (cd06165)
PRK08581 (amidase domain-containing protein), Peptidase_M23 (pfam01551), HNHc (smart00507), peptidase-T (TIGR01882), LPG_synthase_TM (pfam03706), AL_MDR (cd08252), chaperone_ClpB (TIGR03346), Intron_maturas2 (pfam01348), FtsK (COG1674), PspF (COG1221)
LevR (COG3933), DHAK_reg (TIGR02366), PRK07726 (DNA topoisomerase 3), DUF1033 (pfam06279)