myRT

myRT report for GCA_004016205.1_ASM401620v1

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Seq: LPWJ01000665.1 (5713 bp)
Overview 1 RT 1: 2368-5610 bp Neighborhood of RT #1 [2368, 5711] HTH_Tnp_1 HTH_Tnp_1 RVT-GII GIIM HTH_29 Tra5 Feature: gene Location: 2368-3018 bp Feature: domain Description: HTH_Tnp_1 Location: 2377-2512 bp Feature: domain Description: HTH_Tnp_1 Location: 2377-251 2 bp Feature: domain Description: HTH_Tnp_1 Location: 2545-2794 bp Feature: domain Description: HTH_Tnp_1 Location: 2545-2794 bp Feature: gene Location: 3228-3377 bp Feature: gene Location: 3379-4620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3583-4237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3583-4237 bp Feature: domain Description: GIIM Note: maturase Location: 4315-4537 bp Feature: domain Description: GIIM Note: maturase Location: 431 5-4537 bp Feature: gene Location: 4734-5711 bp Feature: domain Description: HTH_29 Location: 4749-4923 bp Feature: domain Description: HTH_29 Location: 4749-4923 bp Feature: domain Description: Tra5 Location: 5028-5610 bp Feature: domain Description: Tra5 Location: 5028-561 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-GII, GIIM (pfam08388), HTH_29 (pfam13551), Tra5 (COG2801)

Seq: LPWJ01000577.1 (17645 bp)
Overview 1 RT 1: 3527-6183 bp Neighborhood of RT #1 [3527, 6183] PqiB RVT-GII RVT-GII Feature: gene Location: 3527-4405 bp Feature: domain Description: PqiB Location: 3533-4391 bp Feature: domain Description: PqiB Location: 3533-4391 bp Feature: gene Location: 4405-4605 bp Feature: gene Location: 4467-4796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4707-4773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4707-4773 bp Feature: gene Location: 4811-5245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4814-5129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4814-512 9 bp Feature: gene Location: 5311-5595 bp Feature: gene Location: 5944-6183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PqiB (COG3008), RVT-GII

Seq: LPWJ01000555.1 (11041 bp)
Overview 1 RT 1: 891-3783 bp 2 RT 2: 8067-11025 bp Neighborhood of RT #1 [891, 3783] RVT_N RVT_N RVT-GII Neighborhood of RT #2 [8067, 11039] Histone_HNS RVT-GII DDE_Tnp_1 Feature: gene Location: 891-1019 bp Feature: gene Location: 1077-1394 bp Feature: domain Description: RVT_N Location: 1248-1389 bp Feature: domain Description: RVT_N Location: 1248-13 89 bp Feature: gene Location: 1391-2425 bp Feature: domain Description: RVT_N Location: 1397-1481 bp Feature: domain Description: RVT_N Location: 13 97-1481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1535-2135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153 5-213 5 bp Feature: gene Location: 2913-3506 bp Feature: gene Location: 3520-3783 bp Feature: gene Location: 8067-8204 bp Feature: domain Description: Histone_HNS Location: 8094-8166 bp Feature: domain Description: Histone_HNS Location: 8094-8166 bp Feature: gene Location: 8333-9001 bp Feature: gene Location: 9243-10088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9528-10029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9528-10029 bp Feature: gene Location: 10021-10335 bp Feature: gene Location: 10593-11039 bp Feature: domain Description: DDE_Tnp_1 Location: 10623-11025 bp Feature: domain Description: DDE_Tnp_1 Location: 10623 -11025 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, Histone_HNS (pfam00816), DDE_Tnp_1 (pfam01609)

Seq: LPWJ01000371.1 (1856 bp)
Overview 1 RT 1: 618-1611 bp Neighborhood of RT #1 [618, 1769] RVT-GII GIIM Feature: gene Location: 618-1769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 735-1350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 735-1350 bp Feature: domain Description: GIIM Note: maturase Location: 1410-1611 bp Feature: domain Description: GIIM Note: maturase Location: 14 10-1611 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LPWJ01001061.1 (120760 bp)
Overview 1 RT 1: 101425-105589 bp Neighborhood of RT #1 [101425, 105589] HTH_Tnp_1 HTH_Tnp_1 RVT-GII GIIM HTH_29 Tra5 Feature: gene Location: 101425-102075 bp Feature: domain Description: HTH_Tnp_1 Location: 101434-101569 bp Feature: domain Description: HTH_Tnp_1 Location: 101434-1015 69 bp Feature: domain Description: HTH_Tnp_1 Location: 101602-101851 bp Feature: domain Description: HTH_Tnp_1 Location: 101602-10185 1 bp Feature: gene Location: 102285-102434 bp Feature: gene Location: 102436-103677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102640-103294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102640-103294 bp Feature: domain Description: GIIM Note: maturase Location: 103372-103594 bp Feature: domain Description: GIIM Note: maturase Location: 103372-1035 94 bp Feature: gene Location: 103791-104825 bp Feature: domain Description: HTH_29 Location: 103806-103980 bp Feature: domain Description: HTH_29 Location: 103806-103980 bp Feature: domain Description: Tra5 Location: 104085-104670 bp Feature: domain Description: Tra5 Location: 104085 -104670 bp Feature: gene Location: 105194-105589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-GII, GIIM (pfam08388), HTH_29 (pfam13551), Tra5 (COG2801)

Seq: LPWJ01000161.1 (106433 bp)
Overview 1 RT 1: 7854-18886 bp Neighborhood of RT #1 [7854, 18921] PRK14702 PRK14702 RVT-GII GIIM Y2_Tnp RVT-GII COG3795 Histone_HNS Feature: gene Location: 7854-8186 bp Feature: domain Description: PRK14702 Location: 7860-8169 bp Feature: domain Description: PRK14702 Location: 786 0-816 9 bp Feature: gene Location: 8168-8548 bp Feature: domain Description: PRK14702 Location: 8171-8327 bp Feature: domain Description: PRK14702 Location: 8171-8327 bp Feature: gene Location: 9136-10440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9421-10060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9421-1006 0 bp Feature: domain Description: GIIM Note: maturase Location: 10135-10354 bp Feature: domain Description: GIIM Note: maturase Location: 10135-10354 bp Feature: gene Location: 11150-11290 bp Feature: gene Location: 13236-13589 bp Feature: gene Location: 14715-15134 bp Feature: gene Location: 15269-15778 bp Feature: domain Description: Y2_Tnp Location: 15341-15548 bp Feature: domain Description: Y2_Tnp Location: 15341-15548 bp Feature: gene Location: 16514-17038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16547-16706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 547-16 706 bp Feature: gene Location: 17869-18282 bp Feature: domain Description: COG3795 Location: 17884-18154 bp Feature: domain Description: COG3795 Location: 17884-18154 bp Feature: gene Location: 18652-18921 bp Feature: domain Description: Histone_HNS Location: 18658-18886 bp Feature: domain Description: Histone_HNS Location: 186 58-18886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14702 (insertion element IS2 transposase InsD; Provisional), RVT-GII, GIIM (pfam08388), Y2_Tnp (pfam04986), COG3795 (Uncharacterized conserved protein ), Histone_HNS (pfam00816)