myRT

myRT report for GCA_004018485.1_ASM401848v1

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Seq: SAMZ01000068.1 (19708 bp)
Overview 1 RT 1: 2-3859 bp Neighborhood of RT #1 [2, 3885] COG3547 RVT-GII GIIM DDE_3 heptsyl_trn_I Feature: gene Location: 2-229 bp Feature: domain Description: COG3547 Location: 20-230 bp Feature: domain Description: COG3547 Location: 20-230 bp Feature: gene Location: 1013-2221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1178-1832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 78-1 832 bp Feature: domain Description: GIIM Note: maturase Location: 1913-2135 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 3-21 35 bp Feature: gene Location: 2275-2790 bp Feature: domain Description: DDE_3 Location: 2305-2683 bp Feature: domain Description: DDE_3 Location: 2305-2683 bp Feature: gene Location: 2911-3885 bp Feature: domain Description: heptsyl_trn_I Location: 2917-3859 bp Feature: domain Description: heptsyl_trn_I Location: 291 7-3859 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_3 (pfam13358), heptsyl_trn_I (TIGR02193)

Seq: SAMZ01000055.1 (37013 bp)
Overview 1 RT 1: 20474-25711 bp Neighborhood of RT #1 [20474, 25711] INT_C_like_1 HTH_17 RVT-UNC CoiA Feature: gene Location: 20474-22222 bp Feature: domain Description: INT_C_like_1 Location: 21524-22121 bp Feature: domain Description: INT_C_like_1 Location: 2 152 4-2 2 12 1 bp Feature: gene Location: 22367-22564 bp Feature: domain Description: HTH_17 Location: 22391-22535 bp Feature: domain Description: HTH_17 Location: 2 2 391-2 2 535 bp Feature: gene Location: 22804-24009 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 23122-23665 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2 312 2 -2 3665 bp Feature: gene Location: 24233-25294 bp Feature: domain Description: CoiA Location: 24332-24686 bp Feature: domain Description: CoiA Location: 2 4332 -2 4686 bp Feature: gene Location: 25301-25711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_C_like_1 (cd01184), HTH_17 (pfam12728), RVT-UG27/RVT-CRISPR/RVT-GII(RVT-UNC), CoiA (pfam06054)