myRT

myRT report for GCA_004020645.1_ASM402064v1

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Seq: SAQL01000034.1 (65773 bp)
Overview 1 RT 1: 35362-43201 bp Neighborhood of RT #1 [35362, 43209] partition_RepB partition_RepA RVT-GII GIIM COG3547 COG3464 COG3464 Feature: gene Location: 35362-36384 bp Feature: domain Description: partition_RepB Location: 35368-36355 bp Feature: domain Description: partition_RepB Location: 35368-36355 bp Feature: gene Location: 36384-37580 bp Feature: domain Description: partition_RepA Location: 36429-37578 bp Feature: domain Description: partition_RepA Location: 36429-37578 bp Feature: gene Location: 38586-40106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38892-39654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38892-39654 bp Feature: domain Description: GIIM Note: maturase Location: 39723-39939 bp Feature: domain Description: GIIM Note: maturase Location: 39723-39939 bp Feature: gene Location: 40248-41195 bp Feature: domain Description: COG3547 Location: 40299-41142 bp Feature: domain Description: COG3547 Location: 40299-41 1 42 bp Feature: gene Location: 41614-43209 bp Feature: domain Description: COG3464 Location: 41692-41875 bp Feature: domain Description: COG3464 Location: 41 692-41 875 bp Feature: domain Description: COG3464 Location: 41938-43201 bp Feature: domain Description: COG3464 Location: 41 938-43201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT partition_RepB (TIGR03454), partition_RepA (TIGR03453), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), COG3464 (Transposase )

Seq: SAQL01000111.1 (2012 bp)
Overview 1 RT 1: 139-1733 bp Neighborhood of RT #1 [139, 1733] RVT-GII GIIM Feature: gene Location: 139-1398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355-1009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355-1009 bp Feature: domain Description: GIIM Note: maturase Location: 1090-1312 bp Feature: domain Description: GIIM Note: maturase Location: 1090-1312 bp Feature: gene Location: 1605-1733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SAQL01000099.1 (4344 bp)
Overview 1 RT 1: 2185-4104 bp Neighborhood of RT #1 [2185, 4256] COG3547 RVT-GII RVT-GII Feature: gene Location: 2185-2535 bp Feature: domain Description: COG3547 Location: 2218-2497 bp Feature: domain Description: COG3 547 Location: 2218-2497 bp Feature: gene Location: 2900-3127 bp Feature: gene Location: 3164-3622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3419-3602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 419-3 602 bp Feature: gene Location: 3798-4256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3801-4104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 801-4104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII

Seq: SAQL01000001.1 (562254 bp)
Overview 1 RT 1: 471903-478510 bp Neighborhood of RT #1 [471903, 478510] PRK07078 Toprim_3 RVT-GII GIIM Spo0J Feature: gene Location: 471903-472049 bp Feature: gene Location: 472077-473114 bp Feature: domain Description: PRK07078 Location: 472098-472392 bp Feature: domain Description: PRK07078 Location: 4 72098-4 72392 bp Feature: domain Description: Toprim_3 Location: 472773-473037 bp Feature: domain Description: Toprim_3 Location: 4 72773-4 73037 bp Feature: gene Location: 473209-474588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 473539-474157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 73539-4 74 157 bp Feature: domain Description: GIIM Note: maturase Location: 474208-474433 bp Feature: domain Description: GIIM Note: maturase Location: 4 74 208-4 74 4 33 bp Feature: gene Location: 475059-477149 bp Feature: domain Description: Spo0J Location: 475104-475857 bp Feature: domain Description: Spo0J Location: 4 75104 -4 75857 bp Feature: gene Location: 477314-478510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07078 (hypothetical protein; Validated), Toprim_3 (pfam13362), RVT-GII, GIIM (pfam08388), Spo0J (COG1475)