myRT

myRT report for GCA_004025935.1_ASM402593v1

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Seq: SAZV01000089.1 (21183 bp)
Overview 1 RT 1: 1-3166 bp Neighborhood of RT #1 [1, 3228] PHA02517 RVT-GII GIIM PHA02517 DDE_Tnp_Tn3 Feature: gene Location: 1-294 bp Feature: domain Description: PHA02517 Location: 4-229 bp Feature: domain Description: PHA0251 7 Location: 4-229 bp Feature: gene Location: 886-2409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1159-1891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 59-1 891 bp Feature: domain Description: GIIM Note: maturase Location: 1966-2164 bp Feature: domain Description: GIIM Note: maturase Location: 1 966-21 64 bp Feature: gene Location: 2527-2973 bp Feature: domain Description: PHA02517 Location: 2530-2968 bp Feature: domain Description: PHA0251 7 Location: 2530-2968 bp Feature: gene Location: 3055-3228 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3058-3166 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3058-31 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DDE_Tnp_Tn3 (pfam01526)

Seq: SAZV01000006.1 (163011 bp)
Overview 1 RT 1: 28838-35081 bp Neighborhood of RT #1 [28838, 35218] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 28838-29104 bp Feature: domain Description: Phage_integrase Location: 28904-29000 bp Feature: domain Description: Phage_integrase Location: 2 8904-2 9000 bp Feature: gene Location: 29187-29657 bp Feature: gene Location: 30004-33213 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30532-31021 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30532 -3102 1 bp Feature: domain Description: nitrilase Location: 32527-33124 bp Feature: domain Description: nitrilase Location: 32 52 7-3312 4 bp Feature: gene Location: 33508-34311 bp Feature: domain Description: AbiEi_3_N Location: 33541-33802 bp Feature: domain Description: AbiEi_3_N Location: 33541-33802 bp Feature: domain Description: AbiEi_3 Location: 33814-34270 bp Feature: domain Description: AbiEi_3 Location: 33814-342 70 bp Feature: gene Location: 34298-35218 bp Feature: domain Description: AbiEii Location: 34340-35081 bp Feature: domain Description: AbiEii Location: 34340-35081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: SAZV01000110.1 (4063 bp)
Overview 1 RT 1: 93-2714 bp Neighborhood of RT #1 [93, 2714] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 93-1760 bp Feature: domain Description: RVT_N Location: 141-378 bp Feature: domain Description: RVT_N Location: 141-3 78 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1071 bp Feature: domain Description: GIIM Note: maturase Location: 1122-1356 bp Feature: domain Description: GIIM Note: maturase Location: 1122-13 56 bp Feature: domain Description: HNHc Note: nucleases Location: 1566-1725 bp Feature: domain Description: HNHc Note: nucleases Location: 1566-1725 bp Feature: gene Location: 2040-2222 bp Feature: gene Location: 2334-2714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)