myRT

myRT report for GCA_004100285.1_ASM410028v1

Download annotations/find similar RTs

Seq: SCGC01000037.1 (37011 bp)
Overview 1 RT 1: 16042-19399 bp Neighborhood of RT #1 [16042, 19431] PinE RVT-GII GIIM PRK09413 Feature: gene Location: 16042-16689 bp Feature: domain Description: PinE Location: 16135-16684 bp Feature: domain Description: PinE Location: 1 61 35-1 6684 bp Feature: gene Location: 16789-17190 bp Feature: gene Location: 17406-18758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17727-18345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7727-1 8345 bp Feature: domain Description: GIIM Note: maturase Location: 18393-18624 bp Feature: domain Description: GIIM Note: maturase Location: 1 8393-1 8624 bp Feature: gene Location: 18829-19179 bp Feature: gene Location: 19234-19431 bp Feature: domain Description: PRK09413 Location: 19237-19399 bp Feature: domain Description: PRK0941 3 Location: 1 9237-1 9399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, GIIM (pfam08388), PRK09413 (IS2 repressor TnpA; Reviewed)

Seq: SCGC01000001.1 (451557 bp)
Overview 1 RT 1: 22258-28501 bp Neighborhood of RT #1 [22258, 28638] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22258-22524 bp Feature: domain Description: Phage_integrase Location: 22324-22420 bp Feature: domain Description: Phage_integrase Location: 2 2 32 4-2 2 42 0 bp Feature: gene Location: 22607-23077 bp Feature: gene Location: 23424-26633 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23952-24441 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 3952 -2 4441 bp Feature: domain Description: nitrilase Location: 25947-26544 bp Feature: domain Description: nitrilase Location: 2 5947-2 6544 bp Feature: gene Location: 26928-27731 bp Feature: domain Description: AbiEi_3_N Location: 26961-27222 bp Feature: domain Description: AbiEi_3_N Location: 2 6961-2 72 2 2 bp Feature: domain Description: AbiEi_3 Location: 27234-27690 bp Feature: domain Description: AbiEi_3 Location: 2 72 34-2 7690 bp Feature: gene Location: 27718-28638 bp Feature: domain Description: AbiEii Location: 27760-28501 bp Feature: domain Description: AbiEii Location: 2 7760-2 8501 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: SCGC01000051.1 (17024 bp)
Overview 1 RT 1: 8934-11848 bp Neighborhood of RT #1 [8934, 11913] RVT-GII GIIM PHA02517 Feature: gene Location: 8934-9077 bp Feature: gene Location: 9102-9305 bp Feature: gene Location: 9373-10896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9646-10378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9646-103 78 bp Feature: domain Description: GIIM Note: maturase Location: 10453-10651 bp Feature: domain Description: GIIM Note: maturase Location: 10453 -10651 bp Feature: gene Location: 10850-11275 bp Feature: gene Location: 11488-11913 bp Feature: domain Description: PHA02517 Location: 11512-11848 bp Feature: domain Description: PHA02517 Location: 11512-11848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)