myRT

myRT report for GCA_004100395.1_ASM410039v1

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Seq: SCIK01000046.1 (27225 bp)
Overview 1 RT 1: 2372-6372 bp Neighborhood of RT #1 [2372, 6380] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2372-3733 bp Feature: domain Description: DcuC Location: 2375-3707 bp Feature: domain Description: DcuC Location: 2375-3707 bp Feature: gene Location: 3786-4157 bp Feature: gene Location: 4379-4825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4685-4787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4685-4787 bp Feature: gene Location: 4873-5022 bp Feature: gene Location: 5349-6380 bp Feature: domain Description: Asparaginase_2 Location: 5439-6372 bp Feature: domain Description: Asparaginase_2 Location: 5439-6372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)

Seq: SCIK01000110.1 (3195 bp)
Overview 1 RT 1: 224-3127 bp Neighborhood of RT #1 [224, 3192] Tra5 RVT-GII GIIM Tra5 Feature: gene Location: 224-655 bp Feature: domain Description: Tra5 Location: 230-647 bp Feature: domain Description: Tra5 Location: 2 30-647 bp Feature: gene Location: 766-996 bp Feature: gene Location: 1048-2289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1321-2053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 1-2 053 bp Feature: domain Description: GIIM Note: maturase Location: 2128-2284 bp Feature: domain Description: GIIM Note: maturase Location: 2 12 8-2 2 84 bp Feature: gene Location: 2881-3192 bp Feature: domain Description: Tra5 Location: 2893-3127 bp Feature: domain Description: Tra5 Location: 2 893-312 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388)

Seq: SCIK01000052.1 (24221 bp)
Overview 1 RT 1: 15870-18282 bp Neighborhood of RT #1 [15870, 18356] PHA02517 InsE RVT-GII RVT-GII IS285 Feature: gene Location: 15870-16571 bp Feature: domain Description: PHA02517 Location: 15888-16566 bp Feature: domain Description: PHA02517 Location: 15888-16566 bp Feature: gene Location: 16712-17014 bp Feature: domain Description: InsE Location: 16715-17000 bp Feature: domain Description: InsE Location: 16715-17000 bp Feature: gene Location: 17053-17256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17098-17254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17098-17254 bp Feature: gene Location: 17290-17526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17293-17473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17293 -17473 bp Feature: gene Location: 17584-17721 bp Feature: gene Location: 17874-18356 bp Feature: domain Description: IS285 Location: 17904-18282 bp Feature: domain Description: IS285 Location: 17904-18282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, IS285 (COG3328)