myRT

myRT report for GCA_004100735.1_ASM410073v1

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Seq: SCJA01000020.1 (88884 bp)
Overview 1 RT 1: 84421-88006 bp Neighborhood of RT #1 [84421, 88815] HTH_XRE PRK09692 RVT-UG5 Feature: gene Location: 84421-84978 bp Feature: domain Description: HTH_XRE Location: 84544-84712 bp Feature: domain Description: HTH_XRE Location: 84544-8471 2 bp Feature: gene Location: 85656-86912 bp Feature: domain Description: PRK09692 Location: 85665-86868 bp Feature: domain Description: PRK09692 Location: 85665-86868 bp Feature: gene Location: 87004-88815 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 87478-88006 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 87478-88006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), PRK09692 (Integrase; provisional), RVT-UG5

Seq: SCJA01000120.1 (3672 bp)
Overview 1 RT 1: 1-2682 bp Neighborhood of RT #1 [1, 2747] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1-225 bp Feature: domain Description: PHA02517 Location: 4-226 bp Feature: domain Description: PHA02 517 Location: 4-2 2 6 bp Feature: gene Location: 342-1865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 615-1347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 615-1347 bp Feature: domain Description: GIIM Note: maturase Location: 1422-1620 bp Feature: domain Description: GIIM Note: maturase Location: 142 2 -162 0 bp Feature: gene Location: 1819-2244 bp Feature: gene Location: 2457-2747 bp Feature: domain Description: PHA02517 Location: 2463-2682 bp Feature: domain Description: PHA02 517 Location: 2 463-2 682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: SCJA01000098.1 (6428 bp)
Overview 1 RT 1: 4622-6193 bp Neighborhood of RT #1 [4622, 6193] PHA02517 InsE RVT-GII Feature: gene Location: 4622-4882 bp Feature: domain Description: PHA02517 Location: 4664-4880 bp Feature: domain Description: PHA02517 Location: 4664-4880 bp Feature: gene Location: 4995-5204 bp Feature: domain Description: InsE Location: 5007-5193 bp Feature: domain Description: InsE Location: 5007-5193 bp Feature: gene Location: 5386-5679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5515-5605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5515-5605 bp Feature: gene Location: 5852-6193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII