myRT

myRT report for GCA_004102765.1_ASM410276v1

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Seq: SCEH01000001.1 (227255 bp)
Overview 1 RT 1: 127268-129949 bp 2 RT 2: 183117-186317 bp Neighborhood of RT #1 [127268, 129949] RVT-UG27 Neighborhood of RT #2 [183117, 186317] Avd_like RVT-DGRs Feature: gene Location: 127268-127420 bp Feature: gene Location: 127912-128070 bp Feature: gene Location: 128114-129385 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 128303-128936 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1 28303-1 28936 bp Feature: gene Location: 129378-129629 bp Feature: gene Location: 129635-129949 bp Feature: gene Location: 183117-183500 bp Feature: domain Description: Avd_like Location: 183144-183453 bp Feature: domain Description: Avd_like Location: 1 831 44-1 83453 bp Feature: gene Location: 183647-183787 bp Feature: gene Location: 183795-185114 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 183972-184677 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 83972-1 84677 bp Feature: gene Location: 185153-185563 bp Feature: gene Location: 185646-186317 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27, Avd_like (cd16376), RVT-DGRs

Seq: SCEH01000022.1 (50399 bp)
Overview 1 RT 1: 15012-19099 bp 2 RT 2: 23359-29197 bp Neighborhood of RT #1 [15012, 19099] TraO Bac_Flav_CT_N RVT-GII Intron_maturas2 HNHc Neighborhood of RT #2 [23359, 29211] DUF4141 Syntaxin-6_N Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 15012-15590 bp Feature: domain Description: TraO Location: 15087-15585 bp Feature: domain Description: TraO Location: 15087-15585 bp Feature: gene Location: 15594-16475 bp Feature: domain Description: Bac_Flav_CT_N Location: 15717-16455 bp Feature: domain Description: Bac_Flav_CT_N Location: 15717-16455 bp Feature: gene Location: 16465-18273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16729-17551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1672 9-17551 bp Feature: domain Description: Intron_maturas2 Location: 17695-17932 bp Feature: domain Description: Intron_maturas2 Location: 17695-17932 bp Feature: domain Description: HNHc Note: nucleases Location: 18091-18247 bp Feature: domain Description: HNHc Note: nucleases Location: 18091-182 47 bp Feature: gene Location: 18303-18737 bp Feature: gene Location: 18818-19099 bp Feature: gene Location: 23359-23997 bp Feature: domain Description: DUF4141 Location: 23386-23536 bp Feature: domain Description: DUF4141 Location: 2 3386-2 3536 bp Feature: domain Description: Syntaxin-6_N Location: 23620-23812 bp Feature: domain Description: Syntaxin-6_N Location: 2 362 0-2 3812 bp Feature: gene Location: 24146-24622 bp Feature: domain Description: Bac_Flav_CT_G Location: 24167-24608 bp Feature: domain Description: Bac_Flav_CT_G Location: 2 4167-2 4608 bp Feature: gene Location: 24680-26491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24944-25766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4944-2 5766 bp Feature: domain Description: Intron_maturas2 Location: 25841-26144 bp Feature: domain Description: Intron_maturas2 Location: 2 5841-2 6144 bp Feature: domain Description: HNHc Note: nucleases Location: 26309-26462 bp Feature: domain Description: HNHc Note: nucleases Location: 2 6309-2 6462 bp Feature: gene Location: 26493-26801 bp Feature: gene Location: 27112-29211 bp Feature: domain Description: Bac_Flav_CT_G Location: 27115-29197 bp Feature: domain Description: Bac_Flav_CT_G Location: 2 7115-2 9197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraO (pfam10626), Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605), Syntaxin-6_N (pfam09177), Bac_Flav_CT_G (TIGR03783)

Seq: SCEH01000012.1 (77068 bp)
Overview 1 RT 1: 46306-58870 bp Neighborhood of RT #1 [46306, 58899] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF3876 DUF4141 RVT_N RVT-GII GIIM Bac_Flav_CT_J Feature: gene Location: 46306-46542 bp Feature: domain Description: DUF4134 Location: 46351-46528 bp Feature: domain Description: DUF413 4 Location: 463 51-46528 bp Feature: gene Location: 46625-46876 bp Feature: gene Location: 47158-48813 bp Feature: domain Description: RVT_N Location: 47215-47452 bp Feature: domain Description: RVT_N Location: 47215-47452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47503-48151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47503 -48151 bp Feature: domain Description: GIIM Note: maturase Location: 48208-48439 bp Feature: domain Description: GIIM Note: maturase Location: 48208-4843 9 bp Feature: gene Location: 48810-49052 bp Feature: domain Description: DUF4134 Location: 48957-49047 bp Feature: domain Description: DUF413 4 Location: 48957-49047 bp Feature: gene Location: 49064-49396 bp Feature: domain Description: DUF4133 Location: 49082-49352 bp Feature: domain Description: DUF413 3 Location: 49082-493 52 bp Feature: gene Location: 49393-51792 bp Feature: domain Description: Bac_Flav_CT_G Location: 49396-51784 bp Feature: domain Description: Bac_Flav_CT_G Location: 493 96-51784 bp Feature: gene Location: 52361-54184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52625-53447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52625-53 447 bp Feature: domain Description: Intron_maturas2 Location: 53621-53864 bp Feature: domain Description: Intron_maturas2 Location: 53 621-53 864 bp Feature: domain Description: HNHc Note: nucleases Location: 53975-54146 bp Feature: domain Description: HNHc Note: nucleases Location: 53 975-54146 bp Feature: gene Location: 54443-54823 bp Feature: domain Description: DUF3876 Location: 54524-54788 bp Feature: domain Description: DUF3 876 Location: 54524-54788 bp Feature: gene Location: 54847-55059 bp Feature: domain Description: DUF4141 Location: 54859-55015 bp Feature: domain Description: DUF4141 Location: 54859-55015 bp Feature: gene Location: 55353-55505 bp Feature: gene Location: 55683-57365 bp Feature: domain Description: RVT_N Location: 55737-55980 bp Feature: domain Description: RVT_N Location: 5573 7-55980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56025-56679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56025-56679 bp Feature: domain Description: GIIM Note: maturase Location: 56733-56964 bp Feature: domain Description: GIIM Note: maturase Location: 5673 3 -56964 bp Feature: gene Location: 57349-57891 bp Feature: gene Location: 57895-58899 bp Feature: domain Description: Bac_Flav_CT_J Location: 57901-58870 bp Feature: domain Description: Bac_Flav_CT_J Location: 57901-58870 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3876 (pfam12992), DUF4141 (pfam13605)
Bac_Flav_CT_J (TIGR03782)