myRT

myRT report for GCA_004102785.1_ASM410278v1

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Seq: SCEJ01000015.1 (61329 bp)
Overview 1 RT 1: 38058-52911 bp Neighborhood of RT #1 [38058, 52964] KOG1803 KOG1803 KOG1803 PIN_VapC_PhoHL-ATPase RVT-AbiP2 DUF1848 DEXQc_UvrD DEXQc_UvrD UvrD Feature: gene Location: 38058-45164 bp Feature: gene Location: 45154-47487 bp Feature: domain Description: KOG1803 Location: 45805-45949 bp Feature: domain Description: KOG1 803 Location: 45805-45949 bp Feature: domain Description: KOG1803 Location: 46156-46285 bp Feature: domain Description: KOG1 803 Location: 461 56-46285 bp Feature: domain Description: KOG1803 Location: 46606-46861 bp Feature: domain Description: KOG1 803 Location: 46606-46861 bp Feature: domain Description: PIN_VapC_PhoHL-ATPase Location: 47095-47461 bp Feature: domain Description: PIN_VapC_PhoHL-ATPase Location: 47095-47461 bp Feature: gene Location: 47491-49206 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 47959-48433 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 47959-48433 bp Feature: gene Location: 49219-50310 bp Feature: domain Description: DUF1848 Location: 49294-50233 bp Feature: domain Description: DUF1 848 Location: 49294-50233 bp Feature: gene Location: 50313-52964 bp Feature: domain Description: DEXQc_UvrD Location: 51735-51999 bp Feature: domain Description: DEXQc_UvrD Location: 51 735-51 999 bp Feature: domain Description: DEXQc_UvrD Location: 52074-52215 bp Feature: domain Description: DEXQc_UvrD Location: 52074-5221 5 bp Feature: domain Description: UvrD Location: 52647-52911 bp Feature: domain Description: UvrD Location: 52647-5291 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1803 (KOG1803, DNA helicase ), PIN_VapC_PhoHL-ATPase (cd09883), RVT-AbiP2, DUF1848 (pfam08902), DEXQc_UvrD (cd17932), UvrD (COG0210)

Seq: SCEJ01000370.1 (238 bp)
Overview 1 RT 1: 3-231 bp Neighborhood of RT #1 [3, 236] RVT-GII Feature: gene Location: 3-236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-2 31 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SCEJ01000170.1 (478 bp)
Overview 1 RT 1: 2-476 bp Neighborhood of RT #1 [2, 475] RVT-GII Feature: gene Location: 2-475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SCEJ01000375.1 (234 bp)
Overview 1 RT 1: 3-234 bp Neighborhood of RT #1 [3, 233] RVT-GII Feature: gene Location: 3-233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SCEJ01000355.1 (326 bp)
Overview 1 RT 1: 57-312 bp Neighborhood of RT #1 [57, 323] RVT-GII Feature: gene Location: 57-323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60-312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60-312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SCEJ01000094.1 (4141 bp)
Overview 1 RT 1: 249-3878 bp Neighborhood of RT #1 [249, 3878] PDDEXK_4 ycfP RVT-Retrons Feature: gene Location: 249-1562 bp Feature: domain Description: PDDEXK_4 Location: 399-747 bp Feature: domain Description: PDDEXK_4 Location: 399-747 bp Feature: gene Location: 1715-2647 bp Feature: domain Description: ycfP Location: 1724-2099 bp Feature: domain Description: ycfP Location: 1724-2099 bp Feature: gene Location: 2644-3723 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2833-3406 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2833-3406 bp Feature: gene Location: 3747-3878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_4 (pfam14281), ycfP (COG3150), RVT-Retrons

Seq: SCEJ01000009.1 (68740 bp)
Overview 1 RT 1: 42650-55214 bp Neighborhood of RT #1 [42650, 55243] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF3876 DUF4141 RVT_N RVT-GII GIIM Bac_Flav_CT_J Feature: gene Location: 42650-42886 bp Feature: domain Description: DUF4134 Location: 42695-42872 bp Feature: domain Description: DUF4134 Location: 42695-4287 2 bp Feature: gene Location: 42969-43220 bp Feature: gene Location: 43502-45157 bp Feature: domain Description: RVT_N Location: 43559-43796 bp Feature: domain Description: RVT_N Location: 43559-437 96 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43847-44495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43847 -44495 bp Feature: domain Description: GIIM Note: maturase Location: 44552-44783 bp Feature: domain Description: GIIM Note: maturase Location: 44552-447 83 bp Feature: gene Location: 45154-45396 bp Feature: domain Description: DUF4134 Location: 45301-45391 bp Feature: domain Description: DUF4134 Location: 45301-45391 bp Feature: gene Location: 45408-45740 bp Feature: domain Description: DUF4133 Location: 45426-45696 bp Feature: domain Description: DUF4133 Location: 45426-45696 bp Feature: gene Location: 45737-48136 bp Feature: domain Description: Bac_Flav_CT_G Location: 45740-48128 bp Feature: domain Description: Bac_Flav_CT_G Location: 457 40-48128 bp Feature: gene Location: 48705-50528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48969-49791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48969-497 91 bp Feature: domain Description: Intron_maturas2 Location: 49965-50208 bp Feature: domain Description: Intron_maturas2 Location: 49965-50208 bp Feature: domain Description: HNHc Note: nucleases Location: 50319-50490 bp Feature: domain Description: HNHc Note: nucleases Location: 50319-50490 bp Feature: gene Location: 50787-51167 bp Feature: domain Description: DUF3876 Location: 50868-51132 bp Feature: domain Description: DUF387 6 Location: 50868-51132 bp Feature: gene Location: 51191-51403 bp Feature: domain Description: DUF4141 Location: 51203-51359 bp Feature: domain Description: DUF4141 Location: 51203-51359 bp Feature: gene Location: 51697-51849 bp Feature: gene Location: 52027-53709 bp Feature: domain Description: RVT_N Location: 52081-52324 bp Feature: domain Description: RVT_N Location: 52081-52324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52369-53023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52369-53023 bp Feature: domain Description: GIIM Note: maturase Location: 53077-53308 bp Feature: domain Description: GIIM Note: maturase Location: 5307 7 -53308 bp Feature: gene Location: 53693-54235 bp Feature: gene Location: 54239-55243 bp Feature: domain Description: Bac_Flav_CT_J Location: 54245-55214 bp Feature: domain Description: Bac_Flav_CT_J Location: 54245-55214 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3876 (pfam12992), DUF4141 (pfam13605)
Bac_Flav_CT_J (TIGR03782)

Seq: SCEJ01000361.1 (255 bp)
Overview 1 RT 1: 2-254 bp Neighborhood of RT #1 [2, 253] RVT-GII Feature: gene Location: 2-253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SCEJ01000004.1 (107406 bp)
Overview 1 RT 1: 2898-15895 bp 2 RT 2: 76673-80074 bp Neighborhood of RT #1 [2898, 15895] Prophage_tail Prophage_tail RVT-DGRs Neighborhood of RT #2 [76673, 80730] RVT-DGRs Phage_Mu_F Feature: gene Location: 2898-6023 bp Feature: domain Description: Prophage_tail Location: 3321-3567 bp Feature: domain Description: Prophage_tail Location: 3321-3567 bp Feature: domain Description: Prophage_tail Location: 4275-4431 bp Feature: domain Description: Prophage_tail Location: 4275-4431 bp Feature: gene Location: 6020-6523 bp Feature: gene Location: 6530-7921 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6782-7385 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6782-7385 bp Feature: gene Location: 7979-8314 bp Feature: gene Location: 8324-15895 bp Feature: gene Location: 76673-76915 bp Feature: gene Location: 77095-77580 bp Feature: gene Location: 77583-78887 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 77799-78396 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7779 9 -7839 6 bp Feature: gene Location: 78993-79211 bp Feature: gene Location: 79429-80730 bp Feature: domain Description: Phage_Mu_F Location: 79801-80074 bp Feature: domain Description: Phage_Mu_F Location: 79 801-80074 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prophage_tail (pfam06605), RVT-DGRs, Phage_Mu_F (pfam04233)

Seq: SCEJ01000014.1 (61740 bp)
Overview 1 RT 1: 35161-45361 bp Neighborhood of RT #1 [35161, 45399] Laminin_G_3 CotH LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 35161-41919 bp Feature: domain Description: Laminin_G_3 Location: 37576-38005 bp Feature: domain Description: Laminin_G_3 Location: 37576-38005 bp Feature: domain Description: CotH Location: 38800-39115 bp Feature: domain Description: CotH Location: 38800-39115 bp Feature: domain Description: LRR_AMN1 Location: 39700-40180 bp Feature: domain Description: LRR_AMN1 Location: 39700-40180 bp Feature: gene Location: 42029-42292 bp Feature: gene Location: 42328-43761 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42547-43144 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42547-43144 bp Feature: gene Location: 43792-44181 bp Feature: gene Location: 44245-45399 bp Feature: domain Description: Arm-DNA-bind_5 Location: 44278-44509 bp Feature: domain Description: Arm-DNA-bind_5 Location: 44278-44509 bp Feature: domain Description: Phage_int_SAM_5 Location: 44557-44839 bp Feature: domain Description: Phage_int_SAM_5 Location: 44557-44839 bp Feature: domain Description: INTN1_C_like Location: 44887-45361 bp Feature: domain Description: INTN1_C_like Location: 44887-45361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: SCEJ01000165.1 (496 bp)
Overview 1 RT 1: 80-494 bp Neighborhood of RT #1 [80, 493] RVT-GII Feature: gene Location: 80-493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SCEJ01000003.1 (148266 bp)
Overview 1 RT 1: 2-1701 bp Neighborhood of RT #1 [2, 1757] RVT-GII GIIM MotB Feature: gene Location: 2-334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-323 bp Feature: gene Location: 350-769 bp Feature: domain Description: GIIM Note: maturase Location: 377-608 bp Feature: domain Description: GIIM Note: maturase Location: 377-608 bp Feature: gene Location: 903-1757 bp Feature: domain Description: MotB Location: 1092-1701 bp Feature: domain Description: MotB Location: 1092-1701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MotB (COG1360)

Seq: SCEJ01000254.1 (418 bp)
Overview 1 RT 1: 2-413 bp Neighborhood of RT #1 [2, 415] RVT-GII Feature: gene Location: 2-415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221-413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221-413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SCEJ01000017.1 (55766 bp)
Overview 1 RT 1: 10057-15797 bp 2 RT 2: 19831-23879 bp Neighborhood of RT #1 [10057, 15832] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF3876 Neighborhood of RT #2 [19831, 23884] Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N TraO Feature: gene Location: 10057-10389 bp Feature: domain Description: DUF4133 Location: 10075-10345 bp Feature: domain Description: DUF4133 Location: 10075-10345 bp Feature: gene Location: 10386-12326 bp Feature: domain Description: Bac_Flav_CT_G Location: 10389-12309 bp Feature: domain Description: Bac_Flav_CT_G Location: 10389-12309 bp Feature: gene Location: 12884-14716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13169-13991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13169-13991 bp Feature: domain Description: Intron_maturas2 Location: 14060-14393 bp Feature: domain Description: Intron_maturas2 Location: 14 060-14 393 bp Feature: domain Description: HNHc Note: nucleases Location: 14537-14687 bp Feature: domain Description: HNHc Note: nucleases Location: 14 537-14 687 bp Feature: gene Location: 14776-15411 bp Feature: domain Description: Bac_Flav_CT_G Location: 14827-15394 bp Feature: domain Description: Bac_Flav_CT_G Location: 14 827-15394 bp Feature: gene Location: 15452-15832 bp Feature: domain Description: DUF3876 Location: 15533-15797 bp Feature: domain Description: DUF3876 Location: 15533-15797 bp Feature: gene Location: 19831-20256 bp Feature: domain Description: Bac_Flav_CT_N Location: 19834-20236 bp Feature: domain Description: Bac_Flav_CT_N Location: 19834-20236 bp Feature: gene Location: 20428-20763 bp Feature: gene Location: 20798-22609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21062-21884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21062-21884 bp Feature: domain Description: Intron_maturas2 Location: 21956-22265 bp Feature: domain Description: Intron_maturas2 Location: 21956-22265 bp Feature: gene Location: 22599-23306 bp Feature: domain Description: Bac_Flav_CT_N Location: 22722-23283 bp Feature: domain Description: Bac_Flav_CT_N Location: 22722-23283 bp Feature: gene Location: 23309-23884 bp Feature: domain Description: TraO Location: 23384-23879 bp Feature: domain Description: TraO Location: 23384-23879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3876 (pfam12992), Bac_Flav_CT_N (TIGR03780), TraO (pfam10626)

Seq: SCEJ01000032.1 (36122 bp)
Overview 1 RT 1: 2300-14250 bp Neighborhood of RT #1 [2300, 14250] RVT-DGRs DUF4376 Feature: gene Location: 2300-2935 bp Feature: gene Location: 2932-11355 bp Feature: gene Location: 11708-13192 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12089-12692 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12089-12692 bp Feature: gene Location: 13277-13768 bp Feature: domain Description: DUF4376 Location: 13469-13742 bp Feature: domain Description: DUF4376 Location: 13469-13742 bp Feature: gene Location: 13765-14250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF4376 (pfam14301)

Seq: SCEJ01000175.1 (472 bp)
Overview 1 RT 1: 3-255 bp Neighborhood of RT #1 [3, 470] RVT-GII Feature: gene Location: 3-470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60-255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60-255 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SCEJ01000359.1 (298 bp)
Overview 1 RT 1: 3-297 bp Neighborhood of RT #1 [3, 296] RVT-GII Feature: gene Location: 3-296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SCEJ01000378.1 (226 bp)
Overview 1 RT 1: 2-224 bp Neighborhood of RT #1 [2, 223] RVT-GII Feature: gene Location: 2-223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89-224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89-224 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII