myRT

myRT report for GCA_004102905.1_ASM410290v1

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Seq: SCEI01000015.1 (67413 bp)
Overview 1 RT 1: 63385-67381 bp Neighborhood of RT #1 [63385, 67381] RVT-DGRs Feature: gene Location: 63385-63840 bp Feature: gene Location: 63860-64282 bp Feature: gene Location: 64260-65258 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 64425-65046 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 64425-65046 bp Feature: gene Location: 65529-65963 bp Feature: gene Location: 66053-67381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: SCEI01000032.1 (31925 bp)
Overview 1 RT 1: 27782-31923 bp Neighborhood of RT #1 [27782, 31923] RVT-DGRs Feature: gene Location: 27782-28387 bp Feature: gene Location: 28403-28825 bp Feature: gene Location: 28803-29885 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 29058-29673 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 9058-2 9673 bp Feature: gene Location: 30113-30466 bp Feature: gene Location: 30562-31923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: SCEI01000007.1 (136408 bp)
Overview 1 RT 1: 119072-124369 bp Neighborhood of RT #1 [119072, 124374] SLATT_5 RVT-UG17 COG3177 AtoC Feature: gene Location: 119072-119239 bp Feature: gene Location: 119534-120085 bp Feature: domain Description: SLATT_5 Location: 119630-120056 bp Feature: domain Description: SLATT_5 Location: 11963 0-120056 bp Feature: gene Location: 120433-121794 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 120658-121246 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 120658-121246 bp Feature: gene Location: 121903-122970 bp Feature: domain Description: COG3177 Location: 121966-122938 bp Feature: domain Description: COG3 177 Location: 121966-12293 8 bp Feature: gene Location: 123124-124374 bp Feature: domain Description: AtoC Location: 123127-124369 bp Feature: domain Description: AtoC Location: 123 127-1243 69 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, COG3177 (Fic family protein ), AtoC (COG2204)

Seq: SCEI01000014.1 (72872 bp)
Overview 1 RT 1: 5797-18376 bp Neighborhood of RT #1 [5797, 18390] Bac_Flav_CT_J RVT_N RVT-GII GIIM DUF4141 DUF3876 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM DUF4134 Feature: gene Location: 5797-6801 bp Feature: domain Description: Bac_Flav_CT_J Location: 5803-6772 bp Feature: domain Description: Bac_Flav_CT_J Location: 5803-6772 bp Feature: gene Location: 6805-7347 bp Feature: gene Location: 7331-9013 bp Feature: domain Description: RVT_N Location: 7385-7628 bp Feature: domain Description: RVT_N Location: 7385-7628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7673-8327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7673-8327 bp Feature: domain Description: GIIM Note: maturase Location: 8381-8612 bp Feature: domain Description: GIIM Note: maturase Location: 8381-8612 bp Feature: gene Location: 9637-9849 bp Feature: domain Description: DUF4141 Location: 9649-9805 bp Feature: domain Description: DUF4 14 1 Location: 964 9-9805 bp Feature: gene Location: 9873-10259 bp Feature: domain Description: DUF3876 Location: 9960-10224 bp Feature: domain Description: DUF3876 Location: 9960-10224 bp Feature: gene Location: 10512-12335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10776-11598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10776-11598 bp Feature: domain Description: Intron_maturas2 Location: 11772-12015 bp Feature: domain Description: Intron_maturas2 Location: 11772-12015 bp Feature: domain Description: HNHc Note: nucleases Location: 12126-12297 bp Feature: domain Description: HNHc Note: nucleases Location: 12126-12297 bp Feature: gene Location: 12593-12781 bp Feature: gene Location: 12904-15303 bp Feature: domain Description: Bac_Flav_CT_G Location: 12907-15295 bp Feature: domain Description: Bac_Flav_CT_G Location: 12907-15295 bp Feature: gene Location: 15300-15632 bp Feature: domain Description: DUF4133 Location: 15318-15588 bp Feature: domain Description: DUF4 133 Location: 15318-15588 bp Feature: gene Location: 15644-15886 bp Feature: domain Description: DUF4134 Location: 15791-15881 bp Feature: domain Description: DUF4 134 Location: 15791-15881 bp Feature: gene Location: 15883-17538 bp Feature: domain Description: RVT_N Location: 15940-16177 bp Feature: domain Description: RVT_N Location: 1594 0-16177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16228-16876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16228-16876 bp Feature: domain Description: GIIM Note: maturase Location: 16933-17164 bp Feature: domain Description: GIIM Note: maturase Location: 16933-17164 bp Feature: gene Location: 17820-18071 bp Feature: gene Location: 18154-18390 bp Feature: domain Description: DUF4134 Location: 18199-18376 bp Feature: domain Description: DUF4 134 Location: 18199-18376 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4141 (pfam13605), DUF3876 (pfam12992), Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783), DUF4133 (pfam13571)
DUF4134 (pfam13572)

Seq: SCEI01000016.1 (59852 bp)
Overview 1 RT 1: 11592-16776 bp Neighborhood of RT #1 [11592, 16776] uvrA GIIM RVT-GII Feature: gene Location: 11592-14471 bp Feature: domain Description: uvrA Location: 11631-14430 bp Feature: domain Description: uvrA Location: 11631-14430 bp Feature: gene Location: 14606-15025 bp Feature: domain Description: GIIM Note: maturase Location: 14636-14864 bp Feature: domain Description: GIIM Note: maturase Location: 14636-14864 bp Feature: gene Location: 15041-16003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15374-15992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 374-15 992 bp Feature: gene Location: 16026-16211 bp Feature: gene Location: 16633-16776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT uvrA (PRK00349), GIIM (pfam08388), RVT-GII

Seq: SCEI01000005.1 (152352 bp)
Overview 1 RT 1: 135915-146837 bp Neighborhood of RT #1 [135915, 146866] KOG1947 RVT-DGRs PRK10759 Feature: gene Location: 135915-144020 bp Feature: domain Description: KOG1947 Location: 141798-142122 bp Feature: domain Description: KOG1947 Location: 141798-142122 bp Feature: gene Location: 144179-144328 bp Feature: gene Location: 144456-145862 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 144738-145362 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 144738-14536 2 bp Feature: gene Location: 145934-146428 bp Feature: gene Location: 146597-146866 bp Feature: domain Description: PRK10759 Location: 146612-146837 bp Feature: domain Description: PRK10759 Location: 146 6 12-146 837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1947 (KOG1947, Leucine rich repeat proteins, some proteins contain F-box ), RVT-DGRs, PRK10759 (YfiM family lipoprotein)