myRT

myRT report for GCA_004145185.1_ASM414518v1

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Seq: SEBG01000120.1 Cytophagaceae bacterium isolate PMG_043 scaffold_64460, whole genome shotgun sequence (6893 bp)
Overview 1 RT 1: 3-4419 bp Neighborhood of RT #1 [3, 4419] RVT-Retrons AAA_23 SbcC Feature: gene Location: 3-1721 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90-720 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90-720 bp Feature: gene Location: 2327-4057 bp Feature: domain Description: AAA_23 Location: 2408-2744 bp Feature: domain Description: AAA_23 Location: 2408-2744 bp Feature: domain Description: SbcC Location: 2978-3611 bp Feature: domain Description: SbcC Location: 2978-361 1 bp Feature: gene Location: 4060-4419 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, AAA_23 (pfam13476), SbcC (COG0419)

Seq: SEBG01000067.1 Cytophagaceae bacterium isolate PMG_043 scaffold_46877, whole genome shotgun sequence (4234 bp)
Overview 1 RT 1: 1-4233 bp Neighborhood of RT #1 [1, 4233] KOW_NusG RVT-UG3 RVT-UG8 Feature: gene Location: 1-144 bp Feature: domain Description: KOW_NusG Location: 7-136 bp Feature: domain Description: KOW_NusG Location: 7-136 bp Feature: gene Location: 723-1661 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1008-1494 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1008-1494 bp Feature: gene Location: 1950-3920 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2475-2916 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2 475-2 916 bp Feature: gene Location: 4024-4233 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOW_NusG (cd06091), RVT-UG3, RVT-UG8

Seq: SEBG01000639.1 Cytophagaceae bacterium isolate PMG_043 scaffold_150863, whole genome shotgun sequence (1909 bp)
Overview 1 RT 1: 59-1897 bp Neighborhood of RT #1 [59, 1908] RVT-GII Acetyltransf_6 Feature: gene Location: 59-973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80-581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80-581 bp Feature: gene Location: 1273-1908 bp Feature: domain Description: Acetyltransf_6 Location: 1720-1897 bp Feature: domain Description: Acetyltransf_6 Location: 1720-1897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Acetyltransf_6 (pfam13480)

Seq: SEBG01000524.1 Cytophagaceae bacterium isolate PMG_043 scaffold_134195, whole genome shotgun sequence (2072 bp)
Overview 1 RT 1: 841-2035 bp Neighborhood of RT #1 [841, 2070] RVT-UG28 Feature: gene Location: 841-1020 bp Feature: gene Location: 1163-1354 bp Feature: gene Location: 1420-2070 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 1705-2035 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 1705-2035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28

Seq: SEBG01001083.1 Cytophagaceae bacterium isolate PMG_043 scaffold_199230, whole genome shotgun sequence (1574 bp)
Overview 1 RT 1: 1-1306 bp Neighborhood of RT #1 [1, 1329] RVT-UNC RT_RNaseH Feature: gene Location: 1-1329 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 523-691 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 5 23-691 bp Feature: domain Description: RT_RNaseH Location: 979-1306 bp Feature: domain Description: RT_RNaseH Location: 979-1306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-GII/RVT-UG17/RVT-DGRs(RVT-UNC), RT_RNaseH (pfam17917)

Seq: SEBG01002130.1 Cytophagaceae bacterium isolate PMG_043 scaffold_286432, whole genome shotgun sequence (1218 bp)
Overview 1 RT 1: 1-706 bp Neighborhood of RT #1 [1, 1053] RVT-UG2 Feature: gene Location: 1-1053 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 13-706 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 13-706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2

Seq: SEBG01000217.1 Cytophagaceae bacterium isolate PMG_043 scaffold_82919, whole genome shotgun sequence (2878 bp)
Overview 1 RT 1: 614-2875 bp Neighborhood of RT #1 [614, 2875] RVT-GII Feature: gene Location: 614-2152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1088-1778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1088-17 7 8 bp Feature: gene Location: 2196-2621 bp Feature: gene Location: 2675-2875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SEBG01000122.1 Cytophagaceae bacterium isolate PMG_043 scaffold_64982, whole genome shotgun sequence (3398 bp)
Overview 1 RT 1: 387-2881 bp Neighborhood of RT #1 [387, 2881] HTH_XRE RVT-Retrons DUF4145 Feature: gene Location: 387-521 bp Feature: gene Location: 600-911 bp Feature: domain Description: HTH_XRE Location: 612-777 bp Feature: domain Description: HTH_XRE Location: 612-777 bp Feature: gene Location: 916-1881 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1051-1594 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1051-1594 bp Feature: gene Location: 1878-2588 bp Feature: domain Description: DUF4145 Location: 2271-2499 bp Feature: domain Description: DUF4145 Location: 2271-2499 bp Feature: gene Location: 2669-2881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, DUF4145 (pfam13643)

Seq: SEBG01001208.1 Cytophagaceae bacterium isolate PMG_043 scaffold_211401, whole genome shotgun sequence (1510 bp)
Overview 1 RT 1: 2-1459 bp Neighborhood of RT #1 [2, 1500] RVT-GII FlgN Feature: gene Location: 2-745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 686-746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 686-746 bp Feature: gene Location: 961-1500 bp Feature: domain Description: FlgN Location: 1006-1459 bp Feature: domain Description: FlgN Location: 1006-1459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, FlgN (pfam05130)

Seq: SEBG01000114.1 Cytophagaceae bacterium isolate PMG_043 scaffold_62861, whole genome shotgun sequence (3473 bp)
Overview 1 RT 1: 540-3472 bp Neighborhood of RT #1 [540, 3472] HTH_XRE RVT-Retrons Trypsin_2 Feature: gene Location: 540-776 bp Feature: gene Location: 826-1134 bp Feature: domain Description: HTH_XRE Location: 838-1006 bp Feature: domain Description: HTH_XRE Location: 838-10 06 bp Feature: gene Location: 1097-2116 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1244-1790 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1244-1790 bp Feature: gene Location: 2218-3081 bp Feature: domain Description: Trypsin_2 Location: 2293-2809 bp Feature: domain Description: Trypsin_2 Location: 2293-2809 bp Feature: gene Location: 3323-3472 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, Trypsin_2 (pfam13365)

Seq: SEBG01001308.1 Cytophagaceae bacterium isolate PMG_043 scaffold_221001, whole genome shotgun sequence (1463 bp)
Overview 1 RT 1: 212-1346 bp Neighborhood of RT #1 [212, 1462] RVT-GII GIIM Feature: gene Location: 212-1462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 440-1052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 440-1052 bp Feature: domain Description: GIIM Note: maturase Location: 1160-1346 bp Feature: domain Description: GIIM Note: maturase Location: 11 60-1346 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SEBG01001322.1 Cytophagaceae bacterium isolate PMG_043 scaffold_222413, whole genome shotgun sequence (1457 bp)
Overview 1 RT 1: 1-1454 bp Neighborhood of RT #1 [1, 1454] UDP_GE_SDE_e RVT-UG3 Feature: gene Location: 1-138 bp Feature: domain Description: UDP_GE_SDE_e Location: 4-118 bp Feature: domain Description: UDP_GE_SDE_e Location: 4-118 bp Feature: gene Location: 553-885 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 562-823 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 562-823 bp Feature: gene Location: 1215-1454 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UDP_GE_SDE_e (cd05253), RVT-UG3

Seq: SEBG01000438.1 Cytophagaceae bacterium isolate PMG_043 scaffold_121386, whole genome shotgun sequence (2221 bp)
Overview 1 RT 1: 262-2154 bp Neighborhood of RT #1 [262, 2192] DUF4939 RVT-UNC RNase_HI_RT_Ty3 Feature: gene Location: 262-873 bp Feature: domain Description: DUF4939 Location: 295-532 bp Feature: domain Description: DUF4939 Location: 295-532 bp Feature: gene Location: 849-2192 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1338-1497 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 13 38-1497 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1818-2154 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1818-2154 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4939 (pfam16297), RVT-UG11/RVT-UG9/RVT-UG26/RVT-UG4(RVT-UNC), RNase_HI_RT_Ty3 (cd09274)