myRT

myRT report for GCA_004145575.1_ASM414557v1

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Seq: SDYH01000780.1 (1587 bp)
Overview 1 RT 1: 2-1572 bp Neighborhood of RT #1 [2, 1572] RVT-UG5 Feature: gene Location: 2-1276 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 635-1118 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 635-1 1 1 8 bp Feature: gene Location: 1378-1572 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5

Seq: SDYH01000014.1 (18963 bp)
Overview 1 RT 1: 9831-13774 bp Neighborhood of RT #1 [9831, 13774] HEPN_RES_NTD1 RES KOG4059 RVT-Retrons HTH_XRE Feature: gene Location: 9831-10100 bp Feature: gene Location: 10181-12133 bp Feature: domain Description: HEPN_RES_NTD1 Location: 10262-10637 bp Feature: domain Description: HEPN_RES_NTD1 Location: 102 62 -10637 bp Feature: domain Description: RES Location: 10793-11264 bp Feature: domain Description: RES Location: 10793-112 64 bp Feature: domain Description: KOG4059 Location: 11603-12032 bp Feature: domain Description: KOG4059 Location: 11603-12 032 bp Feature: gene Location: 12300-13265 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12456-12963 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 456-12 963 bp Feature: gene Location: 13228-13557 bp Feature: domain Description: HTH_XRE Location: 13243-13402 bp Feature: domain Description: HTH_XRE Location: 132 43-13402 bp Feature: gene Location: 13604-13774 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEPN_RES_NTD1 (pfam18870), RES (smart00953), KOG4059 (KOG4059, Uncharacterized conserved protein ), RVT-Retrons, HTH_XRE (smart00530)

Seq: SDYH01000044.1 (9626 bp)
Overview 1 RT 1: 4465-7189 bp Neighborhood of RT #1 [4465, 9282] RAYT nitrilase group_II_RT_mat RVT-UG6 Feature: gene Location: 4465-5052 bp Feature: domain Description: RAYT Location: 4522-4963 bp Feature: domain Description: RAYT Location: 4522-4963 bp Feature: gene Location: 5206-6117 bp Feature: domain Description: nitrilase Location: 5395-5920 bp Feature: domain Description: nitrilase Location: 53 95-5920 bp Feature: gene Location: 6121-9282 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 6154-6490 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 6154-6490 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 6754-7189 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 6754-7189 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAYT (COG1943), nitrilase (cl11424), group_II_RT_mat (TIGR04416), RVT-UG6

Seq: SDYH01000882.1 (1463 bp)
Overview 1 RT 1: 20-1402 bp Neighborhood of RT #1 [20, 1419] RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 20-169 bp Feature: gene Location: 189-1163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195-786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195-786 bp Feature: domain Description: GIIM Note: maturase Location: 864-1068 bp Feature: domain Description: GIIM Note: maturase Location: 864 -1068 bp Feature: gene Location: 1285-1419 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1291-1402 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1291-14 02 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817)

Seq: SDYH01000530.1 (2023 bp)
Overview 1 RT 1: 3-1905 bp Neighborhood of RT #1 [3, 1905] RVT-GII GIIM Feature: gene Location: 3-155 bp Feature: gene Location: 180-1550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 573-1197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 73-1197 bp Feature: domain Description: GIIM Note: maturase Location: 1239-1443 bp Feature: domain Description: GIIM Note: maturase Location: 1239-1443 bp Feature: gene Location: 1741-1905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SDYH01000651.1 (1763 bp)
Overview 1 RT 1: 1-1759 bp Neighborhood of RT #1 [1, 1761] Piwi_piwi-like_ProArk RVT-UG2 Feature: gene Location: 1-342 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 7-289 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 7-289 bp Feature: gene Location: 391-561 bp Feature: gene Location: 742-1761 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 937-1759 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 937-1759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Piwi_piwi-like_ProArk (cd04659), RVT-UG2

Seq: SDYH01000299.1 (2844 bp)
Overview 1 RT 1: 3-2842 bp Neighborhood of RT #1 [3, 2842] YcjD COG4185 RVT-UG12 Feature: gene Location: 3-527 bp Feature: domain Description: YcjD Location: 180-471 bp Feature: domain Description: YcjD Location: 180-47 1 bp Feature: gene Location: 741-881 bp Feature: domain Description: COG4185 Location: 744-873 bp Feature: domain Description: COG4185 Location: 7 44-87 3 bp Feature: gene Location: 902-2593 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1316-1769 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1316-17 69 bp Feature: gene Location: 2498-2842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YcjD (COG2852), COG4185 (Predicted ABC-type ATPase ), RVT-UG12

Seq: SDYH01000345.1 (2654 bp)
Overview 1 RT 1: 2-2640 bp Neighborhood of RT #1 [2, 2651] COG4185 RVT-Retrons Trypsin_2 PRK09284 Feature: gene Location: 2-508 bp Feature: domain Description: COG4185 Location: 5-485 bp Feature: domain Description: COG418 5 Location: 5-48 5 bp Feature: gene Location: 522-1682 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 528-816 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 528 -8 16 bp Feature: domain Description: Trypsin_2 Location: 1152-1569 bp Feature: domain Description: Trypsin_2 Location: 1152-1569 bp Feature: gene Location: 2191-2358 bp Feature: gene Location: 2379-2651 bp Feature: domain Description: PRK09284 Location: 2382-2640 bp Feature: domain Description: PRK0928 4 Location: 238 2-2640 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4185 (Predicted ABC-type ATPase ), RVT-Retrons, Trypsin_2 (pfam13365), PRK09284 (thiamine biosynthesis protein ThiC; Provisional)