myRT

myRT report for GCA_004151795.1_ASM415179v1

Download annotations/find similar RTs

Seq: SENC01000021.1 (39476 bp)
Overview 1 RT 1: 17881-23234 bp Neighborhood of RT #1 [17881, 23248] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 17881-18171 bp Feature: gene Location: 18430-19614 bp Feature: domain Description: HTH_XRE Location: 18460-18604 bp Feature: domain Description: HTH_XRE Location: 1 8460-1 8604 bp Feature: domain Description: Rol_Rep_N Location: 18637-18901 bp Feature: domain Description: Rol_Rep_N Location: 1 8637-1 8901 bp Feature: domain Description: Rep_trans Location: 18925-19537 bp Feature: domain Description: Rep_trans Location: 1 8925-1 9537 bp Feature: gene Location: 20494-22404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20827-21565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20827-21 565 bp Feature: domain Description: HNHc Note: nucleases Location: 22120-22285 bp Feature: domain Description: HNHc Note: nucleases Location: 221 20-22285 bp Feature: gene Location: 22592-22732 bp Feature: gene Location: 22745-23248 bp Feature: domain Description: ArdA Location: 22763-23234 bp Feature: domain Description: ArdA Location: 22763-23234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275)

Seq: SENC01000026.1 (32214 bp)
Overview 1 RT 1: 20215-25299 bp Neighborhood of RT #1 [20215, 25304] VirB4 RVT-GII HNHc MazE Feature: gene Location: 20215-21909 bp Feature: domain Description: VirB4 Location: 20533-21217 bp Feature: domain Description: VirB4 Location: 2 0533-2 12 17 bp Feature: gene Location: 22177-22410 bp Feature: gene Location: 22597-24474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22912-23650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 912 -2 3650 bp Feature: domain Description: HNHc Note: nucleases Location: 24208-24361 bp Feature: domain Description: HNHc Note: nucleases Location: 2 42 08-2 4361 bp Feature: gene Location: 24662-24982 bp Feature: gene Location: 25041-25304 bp Feature: domain Description: MazE Location: 25062-25299 bp Feature: domain Description: MazE Location: 2 5062 -2 52 99 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), MazE (COG2336)

Seq: SENC01000103.1 (3375 bp)
Overview 1 RT 1: 45-2674 bp Neighborhood of RT #1 [45, 3336] HsdM RVT-AbiP2 Feature: gene Location: 45-1523 bp Feature: domain Description: HsdM Location: 66-1491 bp Feature: domain Description: HsdM Location: 66-1491 bp Feature: gene Location: 1861-3336 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2209-2674 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2209-2674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2