myRT

myRT report for GCA_004167115.1_ASM416711v1

Download annotations/find similar RTs

Seq: RBVK01000178.1 (2705 bp)
Overview 1 RT 1: 159-2311 bp Neighborhood of RT #1 [159, 2311] RVT-GII HNHc Feature: gene Location: 159-1955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453-1149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453-1 1 49 bp Feature: domain Description: HNHc Note: nucleases Location: 1749-1824 bp Feature: domain Description: HNHc Note: nucleases Location: 1 749-1 824 bp Feature: gene Location: 2129-2311 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: RBVK01000112.1 (12382 bp)
Overview 1 RT 1: 7531-12306 bp Neighborhood of RT #1 [7531, 12380] Ftsk_gamma RVT-GII GIIM HNHc Feature: gene Location: 7531-8304 bp Feature: gene Location: 8573-10255 bp Feature: domain Description: Ftsk_gamma Location: 9200-9380 bp Feature: domain Description: Ftsk_gamma Location: 92 00-9380 bp Feature: gene Location: 10596-12380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10806-11511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10806-11511 bp Feature: domain Description: GIIM Note: maturase Location: 11625-11793 bp Feature: domain Description: GIIM Note: maturase Location: 1162 5-11793 bp Feature: domain Description: HNHc Note: nucleases Location: 12141-12306 bp Feature: domain Description: HNHc Note: nucleases Location: 12 141-12 306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ftsk_gamma (smart00843), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: RBVK01000073.1 (22086 bp)
Overview 1 RT 1: 3-4783 bp Neighborhood of RT #1 [3, 4962] RVT-GII GIIM Ftsk_gamma Ftsk_gamma rpsA Feature: gene Location: 3-1787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 213-918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 213 -918 bp Feature: domain Description: GIIM Note: maturase Location: 1032-1200 bp Feature: domain Description: GIIM Note: maturase Location: 103 2-1200 bp Feature: gene Location: 2161-3720 bp Feature: domain Description: Ftsk_gamma Location: 2710-2890 bp Feature: domain Description: Ftsk_gamma Location: 2710-2890 bp Feature: domain Description: Ftsk_gamma Location: 3043-3217 bp Feature: domain Description: Ftsk_gamma Location: 3 043 -3 217 bp Feature: gene Location: 3979-4962 bp Feature: domain Description: rpsA Location: 4246-4783 bp Feature: domain Description: rpsA Location: 4246-4783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Ftsk_gamma (smart00843), rpsA (TIGR00717)

Seq: RBVK01000186.1 (2329 bp)
Overview 1 RT 1: 390-2190 bp Neighborhood of RT #1 [390, 2213] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 390-2213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 654-1488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 654 -14 88 bp Feature: domain Description: Intron_maturas2 Location: 1557-1896 bp Feature: domain Description: Intron_maturas2 Location: 1557-1896 bp Feature: domain Description: HNHc Note: nucleases Location: 2034-2190 bp Feature: domain Description: HNHc Note: nucleases Location: 2034 -2190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: RBVK01000106.1 (14074 bp)
Overview 1 RT 1: 4874-14061 bp Neighborhood of RT #1 [4874, 14061] RapH_N TPR TPR PRK13922 AE_Prim_S_like RVT-UG10 Feature: gene Location: 4874-5965 bp Feature: domain Description: RapH_N Location: 4895-5066 bp Feature: domain Description: RapH_N Location: 4895 -5 066 bp Feature: domain Description: TPR Location: 5201-5468 bp Feature: domain Description: TPR Location: 5 201-5 468 bp Feature: domain Description: TPR Location: 5513-5924 bp Feature: domain Description: TPR Location: 5 5 13-5 924 bp Feature: gene Location: 6428-6655 bp Feature: domain Description: PRK13922 Location: 6515-6635 bp Feature: domain Description: PRK13922 Location: 65 15 -6635 bp Feature: gene Location: 6931-12570 bp Feature: domain Description: AE_Prim_S_like Location: 7141-7360 bp Feature: domain Description: AE_Prim_S_like Location: 7141-7360 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 8347-9001 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 8347-9001 bp Feature: gene Location: 13009-13434 bp Feature: gene Location: 13444-14061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RapH_N (pfam18801), TPR (smart00028), PRK13922 (rod shape-determining protein MreC; Provisional), AE_Prim_S_like (cl01287), RVT-UG10

Seq: RBVK01000180.1 (2680 bp)
Overview 1 RT 1: 261-2450 bp Neighborhood of RT #1 [261, 2587] RVT-GII HNHc Feature: gene Location: 261-479 bp Feature: gene Location: 791-2587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1049-1754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1049-1754 bp Feature: domain Description: HNHc Note: nucleases Location: 2315-2450 bp Feature: domain Description: HNHc Note: nucleases Location: 2315-2450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: RBVK01000196.1 (1975 bp)
Overview 1 RT 1: 149-1809 bp Neighborhood of RT #1 [149, 1809] RVT-GII GIIM Feature: gene Location: 149-1480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 458-1097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 458-1097 bp Feature: domain Description: GIIM Note: maturase Location: 1172-1397 bp Feature: domain Description: GIIM Note: maturase Location: 117 2-1397 bp Feature: gene Location: 1630-1809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: RBVK01000093.1 (16465 bp)
Overview 1 RT 1: 10517-15060 bp Neighborhood of RT #1 [10517, 15074] Rve RVT-GII GIIM DDE_Tnp_1 Feature: gene Location: 10517-11050 bp Feature: domain Description: Rve Location: 10520-11042 bp Feature: domain Description: Rve Location: 10520-11042 bp Feature: gene Location: 11406-11870 bp Feature: gene Location: 12204-13535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12513-13152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12513-13152 bp Feature: domain Description: GIIM Note: maturase Location: 13227-13452 bp Feature: domain Description: GIIM Note: maturase Location: 13227-13452 bp Feature: gene Location: 13685-13864 bp Feature: gene Location: 14016-15074 bp Feature: domain Description: DDE_Tnp_1 Location: 14376-15060 bp Feature: domain Description: DDE_Tnp_1 Location: 14376-15060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609)

Seq: RBVK01000028.1 (66770 bp)
Overview 1 RT 1: 34888-42117 bp Neighborhood of RT #1 [34888, 42117] RVT-GII GIIM KOG1000 KOG1000 Feature: gene Location: 34888-35115 bp Feature: gene Location: 35187-36095 bp Feature: gene Location: 36842-38707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37142-37847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37142-37847 bp Feature: domain Description: GIIM Note: maturase Location: 37934-38117 bp Feature: domain Description: GIIM Note: maturase Location: 379 34-38117 bp Feature: gene Location: 38985-41387 bp Feature: domain Description: KOG1000 Location: 39693-39909 bp Feature: domain Description: KOG1000 Location: 39 69 3-39 9 09 bp Feature: domain Description: KOG1000 Location: 40512-40845 bp Feature: domain Description: KOG1000 Location: 40512-40845 bp Feature: gene Location: 41404-42117 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily )

Seq: RBVK01000147.1 (5299 bp)
Overview 1 RT 1: 613-5068 bp Neighborhood of RT #1 [613, 5193] RVT-GII Intron_maturas2 HNHc RVT-GII HNHc Feature: gene Location: 613-2436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 883-1711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 883-1711 bp Feature: domain Description: Intron_maturas2 Location: 1783-2101 bp Feature: domain Description: Intron_maturas2 Location: 1783-210 1 bp Feature: domain Description: HNHc Note: nucleases Location: 2254-2407 bp Feature: domain Description: HNHc Note: nucleases Location: 2254-2407 bp Feature: gene Location: 2575-2721 bp Feature: gene Location: 3403-5193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3700-4396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3700-4396 bp Feature: domain Description: HNHc Note: nucleases Location: 4936-5068 bp Feature: domain Description: HNHc Note: nucleases Location: 4936-5068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: RBVK01000182.1 (2608 bp)
Overview 1 RT 1: 740-2393 bp Neighborhood of RT #1 [740, 2509] RVT-GII HNHc Feature: gene Location: 740-2509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998-1694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998-1694 bp Feature: domain Description: HNHc Note: nucleases Location: 2255-2393 bp Feature: domain Description: HNHc Note: nucleases Location: 2255-2393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)