myRT

myRT report for GCA_004167165.1_ASM416716v1

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Seq: RCYR01000023.1 (43789 bp)
Overview 1 RT 1: 33534-38009 bp Neighborhood of RT #1 [33534, 38011] RVT-GII Gph PRK05755 Feature: gene Location: 33534-33713 bp Feature: gene Location: 33915-34058 bp Feature: gene Location: 34045-34500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34255-34375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34255-34375 bp Feature: gene Location: 34662-35306 bp Feature: domain Description: Gph Location: 34695-35295 bp Feature: domain Description: Gph Location: 34695-35295 bp Feature: gene Location: 35396-38011 bp Feature: domain Description: PRK05755 Location: 35405-38009 bp Feature: domain Description: PRK05755 Location: 35405-38009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: RCYR01000015.1 (74476 bp)
Overview 1 RT 1: 6097-10069 bp Neighborhood of RT #1 [6097, 10107] RVT-GII VirD4 Feature: gene Location: 6097-7380 bp Feature: gene Location: 7400-8179 bp Feature: gene Location: 8223-8648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8553-8604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8553-8604 bp Feature: gene Location: 8671-8916 bp Feature: gene Location: 9307-10107 bp Feature: domain Description: VirD4 Location: 9559-10069 bp Feature: domain Description: VirD4 Location: 9559-10069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: RCYR01000002.1 (157108 bp)
Overview 1 RT 1: 1221-5193 bp 2 RT 2: 34313-36988 bp Neighborhood of RT #1 [1221, 5225] RVT-DGRs Phage_portal YmfN Neighborhood of RT #2 [34313, 36993] Phage_holin_5_2 RVT-DGRs Phage_XkdX Feature: gene Location: 1221-1454 bp Feature: gene Location: 1505-1819 bp Feature: gene Location: 1891-2682 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1897-2455 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1897-2455 bp Feature: gene Location: 2699-3559 bp Feature: domain Description: Phage_portal Location: 2837-3479 bp Feature: domain Description: Phage_portal Location: 283 7-3 479 bp Feature: gene Location: 3654-5225 bp Feature: domain Description: YmfN Location: 3684-5193 bp Feature: domain Description: YmfN Location: 3 684-5193 bp Feature: gene Location: 34313-34606 bp Feature: domain Description: Phage_holin_5_2 Location: 34358-34589 bp Feature: domain Description: Phage_holin_5_2 Location: 3 43 58-3 4589 bp Feature: gene Location: 34619-34942 bp Feature: gene Location: 34961-36157 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35156-35879 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 5156-3 5879 bp Feature: gene Location: 36368-36853 bp Feature: gene Location: 36850-36993 bp Feature: domain Description: Phage_XkdX Location: 36871-36988 bp Feature: domain Description: Phage_XkdX Location: 3 6871-3 6988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: RCYR01000005.1 (115028 bp)
Overview 1 RT 1: 20736-25220 bp 2 RT 2: 58454-73073 bp Neighborhood of RT #1 [20736, 25220] DUF3801 VirD4 VirD4 RVT-GII Neighborhood of RT #2 [58454, 73501] YtxK COG4646 RVT-GII Intron_maturas2 HNHc A_NRPS_TlmIV_like PRK12316 A_NRPS_TlmIV_like Methyltransf_12 PRK12467 Feature: gene Location: 20736-21227 bp Feature: domain Description: DUF3801 Location: 20802-21195 bp Feature: domain Description: DUF3801 Location: 20802-21195 bp Feature: gene Location: 21224-22153 bp Feature: domain Description: VirD4 Location: 21491-21845 bp Feature: domain Description: VirD4 Location: 214 91-2184 5 bp Feature: domain Description: VirD4 Location: 21935-22091 bp Feature: domain Description: VirD4 Location: 21935-22091 bp Feature: gene Location: 22779-24689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23109-23853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23109-23853 bp Feature: gene Location: 24713-24868 bp Feature: gene Location: 24966-25220 bp Feature: gene Location: 58454-65149 bp Feature: domain Description: YtxK Location: 61259-62120 bp Feature: domain Description: YtxK Location: 61259-62120 bp Feature: domain Description: COG4646 Location: 62180-64745 bp Feature: domain Description: COG4 64 6 Location: 62180-64 74 5 bp Feature: gene Location: 65272-65466 bp Feature: gene Location: 65699-67513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65963-66785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65963-66785 bp Feature: domain Description: Intron_maturas2 Location: 66857-67289 bp Feature: domain Description: Intron_maturas2 Location: 66857-67289 bp Feature: domain Description: HNHc Note: nucleases Location: 67340-67484 bp Feature: domain Description: HNHc Note: nucleases Location: 6734 0-674 84 bp Feature: gene Location: 67869-68021 bp Feature: domain Description: A_NRPS_TlmIV_like Location: 67872-68016 bp Feature: domain Description: A_NRPS_TlmIV_like Location: 67872-68016 bp Feature: gene Location: 68072-73501 bp Feature: domain Description: PRK12316 Location: 68285-69113 bp Feature: domain Description: PRK12316 Location: 68285-69113 bp Feature: domain Description: A_NRPS_TlmIV_like Location: 69596-70946 bp Feature: domain Description: A_NRPS_TlmIV_like Location: 69596-7094 6 bp Feature: domain Description: Methyltransf_12 Location: 71513-71813 bp Feature: domain Description: Methyltransf_12 Location: 71513-71813 bp Feature: domain Description: PRK12467 Location: 72068-73073 bp Feature: domain Description: PRK124 67 Location: 72068-73073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: RCYR01000061.1 (5237 bp)
Overview 1 RT 1: 585-4517 bp Neighborhood of RT #1 [585, 4972] PHA00653 Avd_like RVT-DGRs Phage_holin_4_1 FlgJ Feature: gene Location: 585-1679 bp Feature: domain Description: PHA00653 Location: 678-1677 bp Feature: domain Description: PHA0065 3 Location: 678-1677 bp Feature: gene Location: 1739-2128 bp Feature: domain Description: Avd_like Location: 1799-2102 bp Feature: domain Description: Avd_like Location: 1799-2102 bp Feature: gene Location: 2484-3524 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2694-3309 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2694-3309 bp Feature: gene Location: 3596-4024 bp Feature: domain Description: Phage_holin_4_1 Location: 3650-3977 bp Feature: domain Description: Phage_holin_4_1 Location: 365 0-3977 bp Feature: gene Location: 4028-4972 bp Feature: domain Description: FlgJ Location: 4046-4517 bp Feature: domain Description: FlgJ Location: 4046-45 17 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: RCYR01000034.1 (23876 bp)
Overview 1 RT 1: 12282-19078 bp Neighborhood of RT #1 [12282, 19101] RVT-GII Peptidase_M56 YbxI Penicillinase_R Feature: gene Location: 12282-13304 bp Feature: gene Location: 13361-14872 bp Feature: gene Location: 15143-16915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15671-16058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156 71-16 058 bp Feature: gene Location: 16917-18713 bp Feature: domain Description: Peptidase_M56 Location: 16947-17844 bp Feature: domain Description: Peptidase_M56 Location: 16 947-17844 bp Feature: domain Description: YbxI Location: 17967-18702 bp Feature: domain Description: YbxI Location: 1796 7-18702 bp Feature: gene Location: 18715-19101 bp Feature: domain Description: Penicillinase_R Location: 18736-19078 bp Feature: domain Description: Penicillinase_R Location: 18736 -19078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: RCYR01000009.1 (84705 bp)
Overview 1 RT 1: 49641-52854 bp Neighborhood of RT #1 [49641, 52854] DnaD RVT-DGRs Avd_like Feature: gene Location: 49641-49877 bp Feature: gene Location: 50090-50596 bp Feature: domain Description: DnaD Location: 50180-50510 bp Feature: domain Description: DnaD Location: 50180-50510 bp Feature: gene Location: 50640-51710 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 50880-51483 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 50880-51483 bp Feature: gene Location: 51865-52236 bp Feature: domain Description: Avd_like Location: 51916-52222 bp Feature: domain Description: Avd_like Location: 51916-52222 bp Feature: gene Location: 52237-52854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT