myRT

myRT report for GCA_004167295.1_ASM416729v1

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Seq: RCXZ01000013.1 (147736 bp)
Overview 1 RT 1: 93196-105591 bp Neighborhood of RT #1 [93196, 105722] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 93196-94020 bp Feature: domain Description: PDDEXK_2 Location: 93217-93895 bp Feature: domain Description: PDDEXK_2 Location: 9321 7-93895 bp Feature: gene Location: 94189-96396 bp Feature: gene Location: 96604-97734 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 96925-97468 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 96925-97468 bp Feature: gene Location: 97785-103826 bp Feature: domain Description: DUF4011 Location: 99015-99528 bp Feature: domain Description: DUF401 1 Location: 9901 5-99528 bp Feature: domain Description: DEXXQc_SF1 Location: 99867-100308 bp Feature: domain Description: DEXXQc_SF1 Location: 99867-1 00308 bp Feature: domain Description: DEXXQc_SF1 Location: 101304-102054 bp Feature: domain Description: DEXXQc_SF1 Location: 1 01 304-1 02054 bp Feature: domain Description: TIGR00376 Location: 102183-102573 bp Feature: domain Description: TIGR00376 Location: 1 021 83-1 02573 bp Feature: domain Description: MTES_1575 Location: 102726-103011 bp Feature: domain Description: MTES_1 575 Location: 1 02726-1 0301 1 bp Feature: domain Description: DUF3320 Location: 103341-103476 bp Feature: domain Description: DUF3320 Location: 1 03341 -1 03476 bp Feature: gene Location: 103923-105722 bp Feature: domain Description: rpsA Location: 103992-105591 bp Feature: domain Description: rpsA Location: 1 03992-1 05591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: RCXZ01000002.1 (285808 bp)
Overview 1 RT 1: 261429-263042 bp Neighborhood of RT #1 [261429, 263042] DDE_Tnp_IS66_C group_II_RT_mat RVT-GII Feature: gene Location: 261429-261629 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 261441-261543 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 61441-2 61543 bp Feature: gene Location: 261725-262027 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 261773-262010 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2 61773-2 62 010 bp Feature: gene Location: 262084-262404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262087-262324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 62 087-2 62 32 4 bp Feature: gene Location: 262416-262544 bp Feature: gene Location: 262809-263042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), group_II_RT_mat (TIGR04416), RVT-GII

Seq: RCXZ01000030.1 (85582 bp)
Overview 1 RT 1: 57010-60077 bp Neighborhood of RT #1 [57010, 60151] RVT_N RVT-GII GIIM SSB_OBF Feature: gene Location: 57010-57156 bp Feature: gene Location: 57163-57393 bp Feature: gene Location: 57479-58981 bp Feature: domain Description: RVT_N Location: 57545-57788 bp Feature: domain Description: RVT_N Location: 57545-57788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57833-58475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5783 3 -58475 bp Feature: domain Description: GIIM Note: maturase Location: 58532-58763 bp Feature: domain Description: GIIM Note: maturase Location: 5853 2-58763 bp Feature: gene Location: 59543-59746 bp Feature: gene Location: 59765-60151 bp Feature: domain Description: SSB_OBF Location: 59789-60077 bp Feature: domain Description: SSB_OBF Location: 59789-60077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), SSB_OBF (cd04496)

Seq: RCXZ01000096.1 (2209 bp)
Overview 1 RT 1: 106-2140 bp Neighborhood of RT #1 [106, 2140] RVT_N RVT-GII GIIM Feature: gene Location: 106-1653 bp Feature: domain Description: RVT_N Location: 175-418 bp Feature: domain Description: RVT_N Location: 175-4 18 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 63-1108 bp Feature: domain Description: GIIM Note: maturase Location: 1162-1396 bp Feature: domain Description: GIIM Note: maturase Location: 1162-1396 bp Feature: gene Location: 1693-1875 bp Feature: gene Location: 2009-2140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: RCXZ01000050.1 (44107 bp)
Overview 1 RT 1: 2347-6466 bp Neighborhood of RT #1 [2347, 6471] Bac_Flav_CT_N Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N TraO Feature: gene Location: 2347-2844 bp Feature: domain Description: Bac_Flav_CT_N Location: 2350-2425 bp Feature: domain Description: Bac_Flav_CT_N Location: 235 0-2425 bp Feature: domain Description: Bac_Flav_CT_N Location: 2560-2824 bp Feature: domain Description: Bac_Flav_CT_N Location: 25 60-2824 bp Feature: gene Location: 3015-3350 bp Feature: gene Location: 3385-5196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3649-4471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3649-4471 bp Feature: domain Description: Intron_maturas2 Location: 4540-4849 bp Feature: domain Description: Intron_maturas2 Location: 45 40-4849 bp Feature: gene Location: 5186-5893 bp Feature: domain Description: Bac_Flav_CT_N Location: 5312-5873 bp Feature: domain Description: Bac_Flav_CT_N Location: 5 312-5 873 bp Feature: gene Location: 5896-6471 bp Feature: domain Description: TraO Location: 5971-6466 bp Feature: domain Description: TraO Location: 5 971-6466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348), TraO (pfam10626)

Seq: RCXZ01000012.1 (153960 bp)
Overview 1 RT 1: 17984-21972 bp Neighborhood of RT #1 [17984, 22046] HTH_17 RVT-UG2 COG3943 Feature: gene Location: 17984-18349 bp Feature: domain Description: HTH_17 Location: 18119-18257 bp Feature: domain Description: HTH_17 Location: 18119-18257 bp Feature: gene Location: 18689-18895 bp Feature: gene Location: 18929-20512 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 19166-20126 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1916 6 -20126 bp Feature: gene Location: 20524-21516 bp Feature: gene Location: 21681-22046 bp Feature: domain Description: COG3943 Location: 21720-21972 bp Feature: domain Description: COG3943 Location: 21720-21972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-UG2, COG3943 (Uncharacterized conserved protein )