myRT

myRT report for GCA_004167345.1_ASM416734v1

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Seq: RCXH01000006.1 (284796 bp)
Overview 1 RT 1: 118479-123671 bp Neighborhood of RT #1 [118479, 123682] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 118479-119417 bp Feature: domain Description: Bac_Flav_CT_G Location: 118482-119403 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 1 8482-1 1 9403 bp Feature: gene Location: 119596-119745 bp Feature: gene Location: 120001-121662 bp Feature: domain Description: RVT_N Location: 120055-120298 bp Feature: domain Description: RVT_N Location: 1 20055-1 20298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120343-120991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 20343-1 20991 bp Feature: domain Description: GIIM Note: maturase Location: 121045-121276 bp Feature: domain Description: GIIM Note: maturase Location: 1 21 045-1 21 276 bp Feature: gene Location: 121659-123353 bp Feature: domain Description: Bac_Flav_CT_G Location: 121779-123345 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 21 779-1 23345 bp Feature: gene Location: 123368-123682 bp Feature: domain Description: DUF3876 Location: 123422-123671 bp Feature: domain Description: DUF3876 Location: 1 23422-1 23671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)

Seq: RCXH01000007.1 (235103 bp)
Overview 1 RT 1: 148231-153540 bp Neighborhood of RT #1 [148231, 157661] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 148231-148473 bp Feature: gene Location: 148652-149137 bp Feature: gene Location: 149134-150504 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 149416-150010 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 149416-150010 bp Feature: gene Location: 150542-150745 bp Feature: gene Location: 150942-157661 bp Feature: domain Description: Laminin_G_3 Location: 152385-152463 bp Feature: domain Description: Laminin_G_3 Location: 152 385-152 463 bp Feature: domain Description: Laminin_G_3 Location: 153114-153540 bp Feature: domain Description: Laminin_G_3 Location: 153114-153540 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: RCXH01000002.1 (705363 bp)
Overview 1 RT 1: 63927-68912 bp 2 RT 2: 136938-138481 bp 3 RT 3: 665427-668853 bp Neighborhood of RT #1 [63927, 68917] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF3875 Neighborhood of RT #2 [136938, 138481] HTH_28 RVT-GII Neighborhood of RT #3 [665427, 668867] TraO DUF3872 RVT-AbiP2 DUF3873 Feature: gene Location: 63927-64100 bp Feature: domain Description: Bac_Flav_CT_G Location: 63930-64086 bp Feature: domain Description: Bac_Flav_CT_G Location: 63 93 0-64086 bp Feature: gene Location: 64107-64385 bp Feature: domain Description: Bac_Flav_CT_G Location: 64125-64383 bp Feature: domain Description: Bac_Flav_CT_G Location: 64125-643 83 bp Feature: gene Location: 64463-66274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64727-65549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64727-65549 bp Feature: domain Description: Intron_maturas2 Location: 65624-65939 bp Feature: domain Description: Intron_maturas2 Location: 65624-6593 9 bp Feature: domain Description: HNHc Note: nucleases Location: 66095-66245 bp Feature: domain Description: HNHc Note: nucleases Location: 66095-66245 bp Feature: gene Location: 66821-68650 bp Feature: domain Description: Bac_Flav_CT_G Location: 66824-68636 bp Feature: domain Description: Bac_Flav_CT_G Location: 66824-6863 6 bp Feature: gene Location: 68747-68917 bp Feature: domain Description: DUF3875 Location: 68756-68912 bp Feature: domain Description: DUF3 875 Location: 68756-68912 bp Feature: gene Location: 136938-137090 bp Feature: gene Location: 137268-137558 bp Feature: domain Description: HTH_28 Location: 137292-137436 bp Feature: domain Description: HTH_28 Location: 13 7292-13 743 6 bp Feature: gene Location: 137679-137876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137682-137874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 7682-13 7874 bp Feature: gene Location: 137906-138115 bp Feature: gene Location: 138119-138481 bp Feature: gene Location: 665427-666011 bp Feature: domain Description: TraO Location: 665508-666006 bp Feature: domain Description: TraO Location: 665508-666006 bp Feature: gene Location: 666033-666467 bp Feature: domain Description: DUF3872 Location: 666057-666450 bp Feature: domain Description: DUF3 872 Location: 666057-666450 bp Feature: gene Location: 666518-668035 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 666959-667415 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 666959-667415 bp Feature: gene Location: 668151-668633 bp Feature: gene Location: 668649-668867 bp Feature: domain Description: DUF3873 Location: 668658-668853 bp Feature: domain Description: DUF3 873 Location: 668658-668853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3875 (pfam12991), HTH_28 (pfam13518), TraO (pfam10626), DUF3872 (pfam12988), RVT-AbiP2, DUF3873 (pfam12989)

Seq: RCXH01000003.1 (475025 bp)
Overview 1 RT 1: 69222-71252 bp Neighborhood of RT #1 [69222, 71252] RVT-DGRs Feature: gene Location: 69222-69425 bp Feature: gene Location: 69465-69647 bp Feature: gene Location: 69709-70524 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 70042-70366 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7004 2-70366 bp Feature: gene Location: 70490-70720 bp Feature: gene Location: 70668-71252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: RCXH01000001.1 (714333 bp)
Overview 1 RT 1: 27112-30320 bp Neighborhood of RT #1 [27112, 30320] RVT-UG27 Feature: gene Location: 27112-27390 bp Feature: gene Location: 27420-27686 bp Feature: gene Location: 27736-28998 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 27928-28564 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 27928-285 64 bp Feature: gene Location: 28991-29659 bp Feature: gene Location: 29673-30320 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27