myRT

myRT report for GCA_004167525.1_ASM416752v1

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Seq: RCXW01000005.1 (311657 bp)
Overview 1 RT 1: 299220-304128 bp Neighborhood of RT #1 [299220, 304589] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4141 Feature: gene Location: 299220-301049 bp Feature: domain Description: Bac_Flav_CT_G Location: 299223-301035 bp Feature: domain Description: Bac_Flav_CT_G Location: 299223-301 035 bp Feature: gene Location: 301077-301250 bp Feature: gene Location: 301596-303407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301860-302682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301 860-302682 bp Feature: domain Description: Intron_maturas2 Location: 302757-303075 bp Feature: domain Description: Intron_maturas2 Location: 302757-303075 bp Feature: domain Description: HNHc Note: nucleases Location: 303228-303378 bp Feature: domain Description: HNHc Note: nucleases Location: 303228-303378 bp Feature: gene Location: 303485-303763 bp Feature: domain Description: Bac_Flav_CT_G Location: 303509-303761 bp Feature: domain Description: Bac_Flav_CT_G Location: 303509-303761 bp Feature: gene Location: 303963-304589 bp Feature: domain Description: DUF4141 Location: 303978-304128 bp Feature: domain Description: DUF41 41 Location: 303978-3041 28 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: RCXW01000003.1 (479609 bp)
Overview 1 RT 1: 50481-60645 bp Neighborhood of RT #1 [50481, 60701] Laminin_G_3 CotH LRR_AMN1 RVT-DGRs XerC Feature: gene Location: 50481-57269 bp Feature: domain Description: Laminin_G_3 Location: 52917-53298 bp Feature: domain Description: Laminin_G_3 Location: 52 917-532 98 bp Feature: domain Description: CotH Location: 53562-54606 bp Feature: domain Description: CotH Location: 53562 -54606 bp Feature: domain Description: LRR_AMN1 Location: 55023-55485 bp Feature: domain Description: LRR_AMN1 Location: 5502 3-55485 bp Feature: gene Location: 57331-57498 bp Feature: gene Location: 57643-58998 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 57919-58510 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 57919-58510 bp Feature: gene Location: 59000-59494 bp Feature: gene Location: 59535-60701 bp Feature: domain Description: XerC Location: 59835-60645 bp Feature: domain Description: XerC Location: 59835-60645 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: RCXW01000007.1 (276752 bp)
Overview 1 RT 1: 114196-126216 bp Neighborhood of RT #1 [114196, 126216] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 114196-115995 bp Feature: domain Description: rpsA Location: 114265-115879 bp Feature: domain Description: rpsA Location: 114265-115879 bp Feature: gene Location: 116164-121983 bp Feature: domain Description: DUF4011 Location: 117319-117832 bp Feature: domain Description: DUF4011 Location: 1173 19-11783 2 bp Feature: domain Description: DEXXQc_SF1 Location: 118171-118714 bp Feature: domain Description: DEXXQc_SF1 Location: 118171-118714 bp Feature: domain Description: DEXXQc_SF1 Location: 119608-120358 bp Feature: domain Description: DEXXQc_SF1 Location: 119608-1203 58 bp Feature: domain Description: TIGR00376 Location: 120487-120880 bp Feature: domain Description: TIGR003 76 Location: 120487-120880 bp Feature: domain Description: MTES_1575 Location: 121030-121318 bp Feature: domain Description: MTES_1575 Location: 12103 0-1213 18 bp Feature: domain Description: DUF3320 Location: 121489-121633 bp Feature: domain Description: DUF3 3 20 Location: 121489-12163 3 bp Feature: gene Location: 122020-123153 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 122344-122890 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1223 44-122890 bp Feature: gene Location: 123359-125545 bp Feature: gene Location: 126034-126216 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: RCXW01000064.1 (2210 bp)
Overview 1 RT 1: 106-2140 bp Neighborhood of RT #1 [106, 2140] RVT_N RVT-GII GIIM Feature: gene Location: 106-1653 bp Feature: domain Description: RVT_N Location: 175-418 bp Feature: domain Description: RVT_N Location: 175-4 18 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 63-1108 bp Feature: domain Description: GIIM Note: maturase Location: 1162-1396 bp Feature: domain Description: GIIM Note: maturase Location: 1162-1396 bp Feature: gene Location: 1693-1875 bp Feature: gene Location: 1988-2140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: RCXW01000020.1 (133705 bp)
Overview 1 RT 1: 29029-32350 bp Neighborhood of RT #1 [29029, 32350] HU-HIG YhcG_C RVT_N RVT-GII GIIM Feature: gene Location: 29029-29514 bp Feature: domain Description: HU-HIG Location: 29053-29401 bp Feature: domain Description: HU-HIG Location: 2905 3-29401 bp Feature: gene Location: 29816-30250 bp Feature: domain Description: YhcG_C Location: 29918-30188 bp Feature: domain Description: YhcG_C Location: 29918-30188 bp Feature: gene Location: 30269-31840 bp Feature: domain Description: RVT_N Location: 30302-30536 bp Feature: domain Description: RVT_N Location: 30302-305 36 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30590-31292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 305 90-31292 bp Feature: domain Description: GIIM Note: maturase Location: 31367-31598 bp Feature: domain Description: GIIM Note: maturase Location: 31367-315 98 bp Feature: gene Location: 31733-32023 bp Feature: gene Location: 32123-32350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: RCXW01000001.1 (614997 bp)
Overview 1 RT 1: 265203-270520 bp Neighborhood of RT #1 [265203, 274641] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 265203-265445 bp Feature: gene Location: 265619-266104 bp Feature: gene Location: 266101-267405 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 266314-266908 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 26 6 314-26 6 908 bp Feature: gene Location: 267507-267725 bp Feature: gene Location: 267922-274641 bp Feature: domain Description: Laminin_G_3 Location: 269365-269443 bp Feature: domain Description: Laminin_G_3 Location: 26 936 5-26 9443 bp Feature: domain Description: Laminin_G_3 Location: 270094-270520 bp Feature: domain Description: Laminin_G_3 Location: 270094-270520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: RCXW01000024.1 (70174 bp)
Overview 1 RT 1: 32001-40651 bp Neighborhood of RT #1 [32001, 41034] cNMP_binding RVT_N RVT-GII GIIM N6_Mtase COG4646 Feature: gene Location: 32001-32567 bp Feature: domain Description: cNMP_binding Location: 32088-32349 bp Feature: domain Description: cNMP_binding Location: 32088-32349 bp Feature: gene Location: 32707-34035 bp Feature: gene Location: 33989-35656 bp Feature: domain Description: RVT_N Location: 34043-34286 bp Feature: domain Description: RVT_N Location: 34043-34286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34331-34979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34331-3497 9 bp Feature: domain Description: GIIM Note: maturase Location: 35033-35264 bp Feature: domain Description: GIIM Note: maturase Location: 35033-35264 bp Feature: gene Location: 35638-35952 bp Feature: gene Location: 36313-41034 bp Feature: domain Description: N6_Mtase Location: 36625-37225 bp Feature: domain Description: N6_Mtase Location: 36625-37 225 bp Feature: domain Description: COG4646 Location: 38623-40651 bp Feature: domain Description: COG4646 Location: 38623-40651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT