myRT

myRT report for GCA_004167545.1_ASM416754v1

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Seq: RCXT01000013.1 (159760 bp)
Overview 1 RT 1: 135716-140664 bp Neighborhood of RT #1 [135716, 140687] RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 135716-135979 bp Feature: gene Location: 136355-136519 bp Feature: gene Location: 137174-139447 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 137384-137987 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 37384-1 37987 bp Feature: domain Description: Cas1_I-II-III Location: 138449-139409 bp Feature: domain Description: Cas1 _I-II-III Location: 1 38449-1 39409 bp Feature: gene Location: 139480-140268 bp Feature: domain Description: Cmr6_III-B Location: 139561-140257 bp Feature: domain Description: Cmr6_III-B Location: 1 39561 -1 40257 bp Feature: gene Location: 140265-140687 bp Feature: domain Description: Cas_Cmr5 Location: 140337-140664 bp Feature: domain Description: Cas_Cmr5 Location: 1 40337-1 40664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)

Seq: RCXT01000004.1 (417370 bp)
Overview 1 RT 1: 177272-185256 bp Neighborhood of RT #1 [177272, 185256] RVT-DGRs Feature: gene Location: 177272-181798 bp Feature: gene Location: 181804-182118 bp Feature: gene Location: 182484-183530 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 182691-183318 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 182 691-183318 bp Feature: gene Location: 183591-183785 bp Feature: gene Location: 183829-185256 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: RCXT01000005.1 (351124 bp)
Overview 1 RT 1: 178282-189973 bp Neighborhood of RT #1 [178282, 189973] CotH LRR_AMN1 RVT-DGRs Feature: gene Location: 178282-179598 bp Feature: gene Location: 179621-187186 bp Feature: domain Description: CotH Location: 183458-184346 bp Feature: domain Description: CotH Location: 183 458-1843 46 bp Feature: domain Description: LRR_AMN1 Location: 184979-185405 bp Feature: domain Description: LRR_AMN1 Location: 184979-185405 bp Feature: gene Location: 187691-188992 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 187904-188501 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 187904-188501 bp Feature: gene Location: 188992-189474 bp Feature: gene Location: 189683-189973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CotH (pfam08757), LRR_AMN1 (sd00034), RVT-DGRs

Seq: RCXT01000020.1 (79236 bp)
Overview 1 RT 1: 20341-24180 bp Neighborhood of RT #1 [20341, 24180] TraG-D_C RVT_N RVT-GII GIIM Feature: gene Location: 20341-20736 bp Feature: gene Location: 20852-22057 bp Feature: domain Description: TraG-D_C Location: 21434-21767 bp Feature: domain Description: TraG-D_C Location: 214 34 -21767 bp Feature: gene Location: 22062-23714 bp Feature: domain Description: RVT_N Location: 22116-22359 bp Feature: domain Description: RVT_N Location: 22116-22359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22404-23052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224 04 -23052 bp Feature: domain Description: GIIM Note: maturase Location: 23106-23337 bp Feature: domain Description: GIIM Note: maturase Location: 23106-23337 bp Feature: gene Location: 23796-23969 bp Feature: gene Location: 24031-24180 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: RCXT01000003.1 (549835 bp)
Overview 1 RT 1: 188712-193566 bp Neighborhood of RT #1 [188712, 193566] RVT-UG27 Feature: gene Location: 188712-189314 bp Feature: gene Location: 189301-189702 bp Feature: gene Location: 189692-190957 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 189881-190517 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 189881-1905 17 bp Feature: gene Location: 191989-192450 bp Feature: gene Location: 192472-193566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: RCXT01000007.1 (252132 bp)
Overview 1 RT 1: 146292-156462 bp Neighborhood of RT #1 [146292, 156500] Laminin_G_3 CotH LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 146292-153080 bp Feature: domain Description: Laminin_G_3 Location: 148728-149109 bp Feature: domain Description: Laminin_G_3 Location: 148728-149109 bp Feature: domain Description: CotH Location: 149370-150312 bp Feature: domain Description: CotH Location: 149370-150312 bp Feature: domain Description: LRR_AMN1 Location: 150837-151284 bp Feature: domain Description: LRR_AMN1 Location: 150837-151284 bp Feature: gene Location: 153242-153460 bp Feature: gene Location: 153514-154809 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 153730-154321 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 153730-154321 bp Feature: gene Location: 154811-155305 bp Feature: gene Location: 155355-156500 bp Feature: domain Description: Arm-DNA-bind_5 Location: 155379-155625 bp Feature: domain Description: Arm-DNA-bind_5 Location: 155379-1556 25 bp Feature: domain Description: Phage_int_SAM_5 Location: 155664-155949 bp Feature: domain Description: Phage_int_SAM_5 Location: 1556 6 4-155949 bp Feature: domain Description: INTN1_C_like Location: 155988-156462 bp Feature: domain Description: INTN1_C_like Location: 155988-156 46 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)