myRT

myRT report for GCA_004167685.1_ASM416768v1

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Seq: SEZM01000006.1 (140304 bp)
Overview 1 RT 1: 18871-25674 bp Neighborhood of RT #1 [18871, 25847] COG1479 COG1479 DUF1524 RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 18871-20334 bp Feature: domain Description: COG1479 Location: 18955-20140 bp Feature: domain Description: COG1 479 Location: 1 8955-201 40 bp Feature: gene Location: 20337-22367 bp Feature: domain Description: COG1479 Location: 20370-21792 bp Feature: domain Description: COG1 479 Location: 20370-21 792 bp Feature: domain Description: DUF1524 Location: 21939-22332 bp Feature: domain Description: DUF1 524 Location: 21 939-22332 bp Feature: gene Location: 22604-23548 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22718-23309 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2271 8-23309 bp Feature: gene Location: 23541-25175 bp Feature: domain Description: COG3950 Location: 23739-25137 bp Feature: domain Description: COG3950 Location: 23739-251 37 bp Feature: gene Location: 25179-25847 bp Feature: domain Description: TIGR02646 Location: 25251-25674 bp Feature: domain Description: TIGR02646 Location: 25251 -25674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1479 (Uncharacterized conserved protein, contains ParB-like and HNH nuclease domains ), DUF1524 (pfam07510), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: SEZM01000095.1 (1987 bp)
Overview 1 RT 1: 297-1795 bp Neighborhood of RT #1 [297, 1962] RVT-GII GIIM Feature: gene Location: 297-470 bp Feature: gene Location: 691-1962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 904-1525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 904-152 5 bp Feature: domain Description: GIIM Note: maturase Location: 1570-1795 bp Feature: domain Description: GIIM Note: maturase Location: 1570-1795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SEZM01000001.1 (278363 bp)
Overview 1 RT 1: 24745-30193 bp Neighborhood of RT #1 [24745, 30219] HPT RVT-UG4 Big_1 Big_1 OMP_b-brl LysM Feature: gene Location: 24745-25071 bp Feature: domain Description: HPT Location: 24850-24997 bp Feature: domain Description: HPT Location: 24850-24997 bp Feature: gene Location: 25230-25466 bp Feature: gene Location: 25881-26684 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 26226-26640 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 26226-26640 bp Feature: gene Location: 26761-29247 bp Feature: domain Description: Big_1 Location: 28189-28387 bp Feature: domain Description: Big_1 Location: 28189-283 87 bp Feature: domain Description: Big_1 Location: 28495-28702 bp Feature: domain Description: Big_1 Location: 28495-28702 bp Feature: gene Location: 29392-30219 bp Feature: domain Description: OMP_b-brl Location: 29413-29854 bp Feature: domain Description: OMP_b-brl Location: 29413 -29854 bp Feature: domain Description: LysM Location: 30061-30193 bp Feature: domain Description: LysM Location: 3 0061-3 0193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HPT (smart00073), RVT-UG4, Big_1 (pfam02369), OMP_b-brl (pfam13505), LysM (smart00257)

Seq: SEZM01000017.1 (99574 bp)
Overview 1 RT 1: 93227-96959 bp Neighborhood of RT #1 [93227, 96982] YfdV DDE_Tnp_1_assoc RVT-GII GIIM WYL Feature: gene Location: 93227-93427 bp Feature: domain Description: YfdV Location: 93233-93410 bp Feature: domain Description: YfdV Location: 93233-934 10 bp Feature: gene Location: 93611-94102 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 93635-93893 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 93635-93893 bp Feature: gene Location: 94680-95831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94842-95535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94 84 2-95535 bp Feature: domain Description: GIIM Note: maturase Location: 95619-95817 bp Feature: domain Description: GIIM Note: maturase Location: 95619-95817 bp Feature: gene Location: 96132-96644 bp Feature: gene Location: 96662-96982 bp Feature: domain Description: WYL Location: 96674-96959 bp Feature: domain Description: WYL Location: 96674 -96959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfdV (COG0679), DDE_Tnp_1_assoc (pfam13808), RVT-GII, GIIM (pfam08388), WYL (pfam13280)