myRT

myRT report for GCA_004167785.1_ASM416778v1

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Seq: RCXR01000041.1 (2429 bp)
Overview 1 RT 1: 1-2388 bp Neighborhood of RT #1 [1, 2388] RVT_N RVT-GII GIIM Feature: gene Location: 1-135 bp Feature: gene Location: 138-1793 bp Feature: domain Description: RVT_N Location: 195-432 bp Feature: domain Description: RVT_N Location: 1 95-432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 483-1131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 483-1 1 31 bp Feature: domain Description: GIIM Note: maturase Location: 1188-1419 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 88-1 41 9 bp Feature: gene Location: 2095-2388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: RCXR01000003.1 (691366 bp)
Overview 1 RT 1: 165816-177199 bp Neighborhood of RT #1 [165816, 177199] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 pfam08757 LRR_AMN1 Feature: gene Location: 165816-166961 bp Feature: domain Description: Arm-DNA-bind_5 Location: 165840-166086 bp Feature: domain Description: Arm-DNA-bind_5 Location: 165840-166086 bp Feature: domain Description: Phage_int_SAM_5 Location: 166125-166410 bp Feature: domain Description: Phage_int_SAM_5 Location: 16612 5-166410 bp Feature: domain Description: INTN1_C_like Location: 166449-166923 bp Feature: domain Description: INTN1_C_like Location: 166449-16692 3 bp Feature: gene Location: 167011-167505 bp Feature: gene Location: 167507-168862 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 167783-168374 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 167783-168374 bp Feature: gene Location: 169235-176023 bp Feature: domain Description: Laminin_G_3 Location: 171671-172052 bp Feature: domain Description: Laminin_G_3 Location: 171671-172 052 bp Feature: domain Description: pfam08757 Location: 172847-173171 bp Feature: domain Description: pfam08757 Location: 172 847-173171 bp Feature: domain Description: LRR_AMN1 Location: 173783-174227 bp Feature: domain Description: LRR_AMN1 Location: 173783-1742 2 7 bp Feature: gene Location: 176033-177199 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: RCXR01000005.1 (413806 bp)
Overview 1 RT 1: 180109-184244 bp 2 RT 2: 407950-413264 bp Neighborhood of RT #1 [180109, 184244] RVT-DGRs Neighborhood of RT #2 [407950, 413284] DUF3876 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 180109-181131 bp Feature: gene Location: 181152-182432 bp Feature: gene Location: 182701-183516 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 183034-183361 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 183 03 4-183 3 61 bp Feature: gene Location: 183482-183712 bp Feature: gene Location: 183660-184244 bp Feature: gene Location: 407950-408264 bp Feature: domain Description: DUF3876 Location: 408004-408253 bp Feature: domain Description: DUF3 876 Location: 408004-408253 bp Feature: gene Location: 408279-409361 bp Feature: domain Description: Bac_Flav_CT_G Location: 408408-409353 bp Feature: domain Description: Bac_Flav_CT_G Location: 408408-4093 53 bp Feature: gene Location: 409351-411159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409615-410437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409615-41043 7 bp Feature: domain Description: Intron_maturas2 Location: 410506-410818 bp Feature: domain Description: Intron_maturas2 Location: 410506-410818 bp Feature: domain Description: HNHc Note: nucleases Location: 410992-411133 bp Feature: domain Description: HNHc Note: nucleases Location: 410992-41113 3 bp Feature: gene Location: 411167-411667 bp Feature: gene Location: 411725-413284 bp Feature: domain Description: Bac_Flav_CT_G Location: 411728-413264 bp Feature: domain Description: Bac_Flav_CT_G Location: 411728-413 264 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: RCXR01000037.1 (4688 bp)
Overview 1 RT 1: 1129-4687 bp Neighborhood of RT #1 [1129, 4686] DUF4141 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_J Feature: gene Location: 1129-1287 bp Feature: domain Description: DUF4141 Location: 1144-1285 bp Feature: domain Description: DUF4 14 1 Location: 114 4 -1285 bp Feature: gene Location: 1396-1557 bp Feature: gene Location: 1877-3712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2171-2993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2171-2993 bp Feature: domain Description: Intron_maturas2 Location: 3152-3521 bp Feature: domain Description: Intron_maturas2 Location: 3152-3521 bp Feature: domain Description: HNHc Note: nucleases Location: 3545-3686 bp Feature: domain Description: HNHc Note: nucleases Location: 354 5-3686 bp Feature: gene Location: 3705-4241 bp Feature: gene Location: 4270-4686 bp Feature: domain Description: Bac_Flav_CT_J Location: 4291-4687 bp Feature: domain Description: Bac_Flav_CT_J Location: 4 291-4 687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: RCXR01000023.1 (104842 bp)
Overview 1 RT 1: 55755-67457 bp Neighborhood of RT #1 [55755, 67457] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 55755-57557 bp Feature: domain Description: rpsA Location: 55824-57441 bp Feature: domain Description: rpsA Location: 5 5 824-5 7441 bp Feature: gene Location: 57654-63611 bp Feature: domain Description: DUF4011 Location: 58884-59397 bp Feature: domain Description: DUF4011 Location: 5 8884-5 9397 bp Feature: domain Description: DEXXQc_SF1 Location: 59736-60702 bp Feature: domain Description: DEXXQc_SF1 Location: 5 9736-60702 bp Feature: domain Description: DEXXQc_SF1 Location: 61164-61923 bp Feature: domain Description: DEXXQc_SF1 Location: 61164-61923 bp Feature: domain Description: TIGR00376 Location: 62052-62442 bp Feature: domain Description: TIGR00376 Location: 6205 2-62442 bp Feature: domain Description: MTES_1575 Location: 62595-62880 bp Feature: domain Description: MTES_15 75 Location: 625 95 -62880 bp Feature: domain Description: DUF3320 Location: 63120-63261 bp Feature: domain Description: DUF3320 Location: 63120-63261 bp Feature: gene Location: 63613-64743 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63934-64477 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63934-64477 bp Feature: gene Location: 64949-67156 bp Feature: gene Location: 67296-67457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT