myRT

myRT report for GCA_004167985.1_ASM416798v1

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Seq: SEZP01000002.1 (251076 bp)
Overview 1 RT 1: 141458-146858 bp Neighborhood of RT #1 [141458, 146932] OMP_b-brl LysM Big_1 Big_1 RVT-UG4 HPT Feature: gene Location: 141458-142285 bp Feature: domain Description: OMP_b-brl Location: 141479-141920 bp Feature: domain Description: OMP_b-brl Location: 1 41 479-1 41 920 bp Feature: domain Description: LysM Location: 142127-142259 bp Feature: domain Description: LysM Location: 1 421 27-1 42259 bp Feature: gene Location: 142430-144916 bp Feature: domain Description: Big_1 Location: 143858-144056 bp Feature: domain Description: Big_1 Location: 1 43858-1 44056 bp Feature: domain Description: Big_1 Location: 144164-144371 bp Feature: domain Description: Big_1 Location: 1 441 64-1 44371 bp Feature: gene Location: 144993-145796 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 145338-145752 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 45338-1 45752 bp Feature: gene Location: 146211-146447 bp Feature: gene Location: 146606-146932 bp Feature: domain Description: HPT Location: 146711-146858 bp Feature: domain Description: HPT Location: 1 4671 1 -1 46858 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OMP_b-brl (pfam13505), LysM (smart00257), Big_1 (pfam02369), RVT-UG4, HPT (smart00073)

Seq: SEZP01000008.1 (140309 bp)
Overview 1 RT 1: 18876-25679 bp Neighborhood of RT #1 [18876, 25852] COG1479 COG1479 DUF1524 RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 18876-20339 bp Feature: domain Description: COG1479 Location: 18960-20145 bp Feature: domain Description: COG1479 Location: 18960-2 0145 bp Feature: gene Location: 20342-22372 bp Feature: domain Description: COG1479 Location: 20375-21797 bp Feature: domain Description: COG1479 Location: 2 0375-2 1797 bp Feature: domain Description: DUF1524 Location: 21944-22337 bp Feature: domain Description: DUF152 4 Location: 2 1944-2 2 337 bp Feature: gene Location: 22609-23553 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22723-23314 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 2 72 3-2 3314 bp Feature: gene Location: 23546-25180 bp Feature: domain Description: COG3950 Location: 23744-25142 bp Feature: domain Description: COG3950 Location: 2 3744-2 5142 bp Feature: gene Location: 25184-25852 bp Feature: domain Description: TIGR02646 Location: 25256-25679 bp Feature: domain Description: TIGR02 646 Location: 2 52 56-2 5679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1479 (Uncharacterized conserved protein, contains ParB-like and HNH nuclease domains ), DUF1524 (pfam07510), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: SEZP01000001.1 (313172 bp)
Overview 1 RT 1: 200570-204302 bp Neighborhood of RT #1 [200570, 204325] YfdV DDE_Tnp_1_assoc RVT-GII GIIM WYL Feature: gene Location: 200570-200770 bp Feature: domain Description: YfdV Location: 200576-200753 bp Feature: domain Description: YfdV Location: 200576-200753 bp Feature: gene Location: 200954-201445 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 200978-201236 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 200978-20123 6 bp Feature: gene Location: 202023-203174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202185-202878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202185-202878 bp Feature: domain Description: GIIM Note: maturase Location: 202962-203160 bp Feature: domain Description: GIIM Note: maturase Location: 202962-203 160 bp Feature: gene Location: 203475-203987 bp Feature: gene Location: 204005-204325 bp Feature: domain Description: WYL Location: 204017-204302 bp Feature: domain Description: WYL Location: 204017-2043 02 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfdV (COG0679), DDE_Tnp_1_assoc (pfam13808), RVT-GII, GIIM (pfam08388), WYL (pfam13280)

Seq: SEZP01000084.1 (2039 bp)
Overview 1 RT 1: 2-1847 bp Neighborhood of RT #1 [2, 2014] RVT-GII GIIM Feature: gene Location: 2-205 bp Feature: gene Location: 349-522 bp Feature: gene Location: 743-2014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 956-1577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 956-1577 bp Feature: domain Description: GIIM Note: maturase Location: 1622-1847 bp Feature: domain Description: GIIM Note: maturase Location: 1622-184 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)