myRT

myRT report for GCA_004168385.1_ASM416838v1

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Seq: SEZO01000001.1 (278370 bp)
Overview 1 RT 1: 24745-30193 bp Neighborhood of RT #1 [24745, 30219] HPT RVT-UG4 Big_1 Big_1 OMP_b-brl LysM Feature: gene Location: 24745-25071 bp Feature: domain Description: HPT Location: 24850-24997 bp Feature: domain Description: HPT Location: 24850-24997 bp Feature: gene Location: 25230-25466 bp Feature: gene Location: 25881-26684 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 26226-26640 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 26226-26640 bp Feature: gene Location: 26761-29247 bp Feature: domain Description: Big_1 Location: 28189-28387 bp Feature: domain Description: Big_1 Location: 281 89-28387 bp Feature: domain Description: Big_1 Location: 28495-28702 bp Feature: domain Description: Big_1 Location: 28495-28702 bp Feature: gene Location: 29392-30219 bp Feature: domain Description: OMP_b-brl Location: 29413-29854 bp Feature: domain Description: OMP_b-brl Location: 2941 3-29854 bp Feature: domain Description: LysM Location: 30061-30193 bp Feature: domain Description: LysM Location: 30061 -301 93 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HPT (smart00073), RVT-UG4, Big_1 (pfam02369), OMP_b-brl (pfam13505), LysM (smart00257)

Seq: SEZO01000006.1 (140304 bp)
Overview 1 RT 1: 18871-25674 bp Neighborhood of RT #1 [18871, 25847] COG1479 COG1479 DUF1524 RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 18871-20334 bp Feature: domain Description: COG1479 Location: 18955-20140 bp Feature: domain Description: COG1479 Location: 18955-2 0140 bp Feature: gene Location: 20337-22367 bp Feature: domain Description: COG1479 Location: 20370-21792 bp Feature: domain Description: COG1479 Location: 2 0370-2 1792 bp Feature: domain Description: DUF1524 Location: 21939-22332 bp Feature: domain Description: DUF152 4 Location: 2 1939-2 2 332 bp Feature: gene Location: 22604-23548 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22718-23309 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 2 718-2 3309 bp Feature: gene Location: 23541-25175 bp Feature: domain Description: COG3950 Location: 23739-25137 bp Feature: domain Description: COG3950 Location: 2 3739-2 5137 bp Feature: gene Location: 25179-25847 bp Feature: domain Description: TIGR02646 Location: 25251-25674 bp Feature: domain Description: TIGR02 646 Location: 2 52 51-2 5674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1479 (Uncharacterized conserved protein, contains ParB-like and HNH nuclease domains ), DUF1524 (pfam07510), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: SEZO01000003.1 (205308 bp)
Overview 1 RT 1: 108327-112065 bp Neighborhood of RT #1 [108327, 112082] WYL RVT-GII GIIM DDE_Tnp_1_assoc YfdV Feature: gene Location: 108327-108647 bp Feature: domain Description: WYL Location: 108339-108624 bp Feature: domain Description: WYL Location: 1083 3 9-108624 bp Feature: gene Location: 108650-109177 bp Feature: gene Location: 109478-110629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109640-110333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109640-1103 3 3 bp Feature: domain Description: GIIM Note: maturase Location: 110417-110615 bp Feature: domain Description: GIIM Note: maturase Location: 110417-110615 bp Feature: gene Location: 111207-111698 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 111231-111489 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 11123 1-111489 bp Feature: gene Location: 111882-112082 bp Feature: domain Description: YfdV Location: 111888-112065 bp Feature: domain Description: YfdV Location: 111888-112065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WYL (pfam13280), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_assoc (pfam13808), YfdV (COG0679)

Seq: SEZO01000095.1 (1987 bp)
Overview 1 RT 1: 297-1795 bp Neighborhood of RT #1 [297, 1962] RVT-GII GIIM Feature: gene Location: 297-470 bp Feature: gene Location: 691-1962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 904-1525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 904 -1525 bp Feature: domain Description: GIIM Note: maturase Location: 1570-1795 bp Feature: domain Description: GIIM Note: maturase Location: 1570-1795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)