myRT

myRT report for GCA_004168405.1_ASM416840v1

Download annotations/find similar RTs

Seq: SEZN01000002.1 (236265 bp)
Overview 1 RT 1: 126686-132086 bp Neighborhood of RT #1 [126686, 132160] OMP_b-brl LysM Big_1 Big_1 RVT-UG4 HPT Feature: gene Location: 126686-127513 bp Feature: domain Description: OMP_b-brl Location: 126707-127148 bp Feature: domain Description: OMP_b-brl Location: 1 26707-1 271 48 bp Feature: domain Description: LysM Location: 127355-127487 bp Feature: domain Description: LysM Location: 1 27355-1 27487 bp Feature: gene Location: 127658-130144 bp Feature: domain Description: Big_1 Location: 129086-129284 bp Feature: domain Description: Big_1 Location: 1 29086-1 29284 bp Feature: domain Description: Big_1 Location: 129392-129599 bp Feature: domain Description: Big_1 Location: 1 29392-1 29599 bp Feature: gene Location: 130221-131024 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 130566-130980 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 30566-1 30980 bp Feature: gene Location: 131439-131675 bp Feature: gene Location: 131834-132160 bp Feature: domain Description: HPT Location: 131939-132086 bp Feature: domain Description: HPT Location: 1 31 939-1 32086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OMP_b-brl (pfam13505), LysM (smart00257), Big_1 (pfam02369), RVT-UG4, HPT (smart00073)

Seq: SEZN01000003.1 (206678 bp)
Overview 1 RT 1: 200331-204063 bp Neighborhood of RT #1 [200331, 204086] YfdV DDE_Tnp_1_assoc RVT-GII GIIM WYL Feature: gene Location: 200331-200531 bp Feature: domain Description: YfdV Location: 200337-200514 bp Feature: domain Description: YfdV Location: 2 00337-2 00514 bp Feature: gene Location: 200715-201206 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 200739-200997 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 2 00739-2 00997 bp Feature: gene Location: 201784-202935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201946-202639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 01946-2 02 639 bp Feature: domain Description: GIIM Note: maturase Location: 202723-202921 bp Feature: domain Description: GIIM Note: maturase Location: 2 02 72 3-2 02 92 1 bp Feature: gene Location: 203236-203748 bp Feature: gene Location: 203766-204086 bp Feature: domain Description: WYL Location: 203778-204063 bp Feature: domain Description: WYL Location: 2 03778-2 04063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfdV (COG0679), DDE_Tnp_1_assoc (pfam13808), RVT-GII, GIIM (pfam08388), WYL (pfam13280)

Seq: SEZN01000007.1 (140309 bp)
Overview 1 RT 1: 18876-25679 bp Neighborhood of RT #1 [18876, 25852] COG1479 COG1479 DUF1524 RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 18876-20339 bp Feature: domain Description: COG1479 Location: 18960-20145 bp Feature: domain Description: COG1479 Location: 18960-20145 bp Feature: gene Location: 20342-22372 bp Feature: domain Description: COG1479 Location: 20375-21797 bp Feature: domain Description: COG1479 Location: 203 75-21797 bp Feature: domain Description: DUF1524 Location: 21944-22337 bp Feature: domain Description: DUF1524 Location: 21944-223 3 7 bp Feature: gene Location: 22609-23553 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22723-23314 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22723 -23 3 14 bp Feature: gene Location: 23546-25180 bp Feature: domain Description: COG3950 Location: 23744-25142 bp Feature: domain Description: COG3 950 Location: 23 744-25142 bp Feature: gene Location: 25184-25852 bp Feature: domain Description: TIGR02646 Location: 25256-25679 bp Feature: domain Description: TIGR02646 Location: 25256-25679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1479 (Uncharacterized conserved protein, contains ParB-like and HNH nuclease domains ), DUF1524 (pfam07510), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: SEZN01000091.1 (1987 bp)
Overview 1 RT 1: 297-1795 bp Neighborhood of RT #1 [297, 1962] RVT-GII GIIM Feature: gene Location: 297-470 bp Feature: gene Location: 691-1962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 904-1525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 904 -1525 bp Feature: domain Description: GIIM Note: maturase Location: 1570-1795 bp Feature: domain Description: GIIM Note: maturase Location: 1570-1795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)