myRT

myRT report for GCA_004168445.1_ASM416844v1

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Seq: SEZK01000008.1 (116118 bp)
Overview 1 RT 1: 90267-97049 bp Neighborhood of RT #1 [90267, 97243] TIGR02646 COG3950 RVT-Retrons COG1479 DUF1524 COG1479 Feature: gene Location: 90267-90935 bp Feature: domain Description: TIGR02646 Location: 90339-90762 bp Feature: domain Description: TIGR02646 Location: 90339-90762 bp Feature: gene Location: 90939-92573 bp Feature: domain Description: COG3950 Location: 91137-92535 bp Feature: domain Description: COG3950 Location: 91 1 37-92535 bp Feature: gene Location: 92566-93510 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 92680-93271 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 92680-93271 bp Feature: gene Location: 93747-95777 bp Feature: domain Description: COG1479 Location: 93780-95202 bp Feature: domain Description: COG1 479 Location: 93780-95202 bp Feature: domain Description: DUF1524 Location: 95349-95742 bp Feature: domain Description: DUF1 524 Location: 95349-95742 bp Feature: gene Location: 95780-97243 bp Feature: domain Description: COG1479 Location: 95864-97049 bp Feature: domain Description: COG1 479 Location: 95864-97049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, COG1479 (Uncharacterized conserved protein, contains ParB-like and HNH nuclease domains ), DUF1524 (pfam07510)

Seq: SEZK01000001.1 (461486 bp)
Overview 1 RT 1: 108981-114429 bp 2 RT 2: 455139-458871 bp Neighborhood of RT #1 [108981, 114455] HPT RVT-UG4 Big_1 Big_1 OMP_b-brl LysM Neighborhood of RT #2 [455139, 458894] YfdV DDE_Tnp_1_assoc RVT-GII GIIM WYL Feature: gene Location: 108981-109307 bp Feature: domain Description: HPT Location: 109086-109233 bp Feature: domain Description: HPT Location: 109086-1092 33 bp Feature: gene Location: 109466-109702 bp Feature: gene Location: 110117-110920 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 110462-110876 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 110462 -110876 bp Feature: gene Location: 110997-113483 bp Feature: domain Description: Big_1 Location: 112425-112623 bp Feature: domain Description: Big_1 Location: 112 42 5-112 62 3 bp Feature: domain Description: Big_1 Location: 112731-112938 bp Feature: domain Description: Big_1 Location: 112 731-112 938 bp Feature: gene Location: 113628-114455 bp Feature: domain Description: OMP_b-brl Location: 113649-114090 bp Feature: domain Description: OMP_b-brl Location: 113649-114090 bp Feature: domain Description: LysM Location: 114297-114429 bp Feature: domain Description: LysM Location: 1142 97-11442 9 bp Feature: gene Location: 455139-455339 bp Feature: domain Description: YfdV Location: 455145-455322 bp Feature: domain Description: YfdV Location: 455145-45532 2 bp Feature: gene Location: 455523-456014 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 455547-455805 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 455547-455805 bp Feature: gene Location: 456592-457743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 456754-457447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 456754-457447 bp Feature: domain Description: GIIM Note: maturase Location: 457531-457729 bp Feature: domain Description: GIIM Note: maturase Location: 457531-45772 9 bp Feature: gene Location: 458044-458556 bp Feature: gene Location: 458574-458894 bp Feature: domain Description: WYL Location: 458586-458871 bp Feature: domain Description: WYL Location: 458586-458871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HPT (smart00073), RVT-UG4, Big_1 (pfam02369), OMP_b-brl (pfam13505), LysM (smart00257), YfdV (COG0679), DDE_Tnp_1_assoc (pfam13808), RVT-GII, GIIM (pfam08388), WYL (pfam13280)

Seq: SEZK01000096.1 (1987 bp)
Overview 1 RT 1: 26-1691 bp Neighborhood of RT #1 [26, 1691] RVT-GII GIIM Feature: gene Location: 26-1297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239-860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 9-860 bp Feature: domain Description: GIIM Note: maturase Location: 905-1130 bp Feature: domain Description: GIIM Note: maturase Location: 905-113 0 bp Feature: gene Location: 1355-1495 bp Feature: gene Location: 1518-1691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)